Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151827g00004 ATGGAAACAGGTATTGAGCAAATTCTTATCGAAGCGCAGCATCGATGGTTGCGTCCAGCTGAAATTTGTGAAATTCTCAGTAATTATAAAATGTTCCACATTGCTCCAGAGCCTGCACTTATGCCACCAAGTGGTTCACTTTTCCTGTTTGATCGGAAGGTGCTGAGATACTTTAGAAAAGATGGTCACAACTGGAGAAAGAAAAAGGATGGGAAAACAGTGAGGGAAGCTCATGAGAGACTTAAGGCTGGAAGTGTGGATGTGTTGCACTGCTACTATGCACATGGAGAAGAAAATGAAAATTTCCAAAGGCGCACATATTGGATGCTTGAAGAGGAACTCTCACACATTGTTCTTGTCCATTATAGGGAAGTGAAGGCAACTAAGGCAAAATTTAGAGATGCTGCCAAAGAAAATCAAGAATCTCTTCCCTATGCACAAGTTGACAAACTACCAGGTCCCGCAACGAAGGAAATTTCTTTATCATGTAGTCTTGATCCAAATAACTACCAGGTTCCATCACAAACTATAGATACAACAAGCATGAACAGCACTCAAGCAACAGAATATGAAGAAGCTGAGTCAGCATTGAATAATTATGCAAGTTCAGAAGACTATTCCTTCCTTGAGACACAAAACCCAGTTGTTAAGAAGATTCCTGATCCTCATTGCCCGCTGCAGTTCATAAATGAACAAGAGAAGTTGTGCGGCACTCCTGGGATGAATCATACCAAGCTCAGTCAAGCTGCCAAAATCAATGACATTCATAATGTTAGATTGGCATATGAACCCCCACAACACCTTGGCTTTTCAATGTGGGAATATGTCTTGAAAAATAATGGGAGAAGTCAATACGTGCCTTTTCAACCTGTACTCCCTGAAATCGAAACTGATAACATGGGAATCAATAGCAACCCCTCTATGAGGGATGAGATATTGAGGTCAAATTTCACCACCAATACTACTGAAGAGAATGAGAAAAAAAATATTGTACAAGTTGAAGGACATTGGAAGGTAATGGATGAGTTAGATGAATTAGATCCTCAAATATCCTTGGAACATTGTCTTGTATATCAAGACAAACCAAAGGTTCTTATGAGAGATGACCCTCAAGAAAAACTAGAGAAGATAAAATCAGATATGGAGACCAATAGAAGCCTGGATGGAATAGAAGATACATATTTCACTCTAAAGAAGACTCTGTTGGATGGATCCCTTGCAGAAGAGGGTCTGAAGAAGCTTGACAGTTTCAACCAATGGATGAGTAAAGAACTTGGAGATGTGGAAGAATCTAAAACTCCATCATCTACTTTTAGTGCTTATTGGGGTACAGTTGAAAGTGAAAATGATGTTGACAATGCAACTATTCCTTCCCAAGTGCACCTGGATACCTATGCACTGGATCCATCTATTTCCCATGATCAACTTTTTACTATTATTGACTTTTCCCCAAGCTGGACATTTGAAGGCTCAGAAATTAAGATTCTCATTTATGGACAACTCTTGAGGAGTCTACAGGAAGCAGAACAATGTAAATGGTCTTGCATGTTTGGTGAGGTAGAAGTGCCAGCTCAGATCATTGACAATGGCGTTCTTTCTTGTTATACTCCTCCACACAAAAGTGGGAGGGTTCCTTTCTATGTGACTTGTTCCAATAGGTTAGCATGTAGTGAAATACGAGAATTTGAATTCCGAGACAATTACACCCAAGAAGTCAACAATGCAGCTGAGCAGAGAGACAGCATTTTTTATACTTTCAGTGTGCGATTTGGAGAGCTACTGTACTTGGGGCATGCCTTACCTCAAAACTTAGACCCAATTAGTGTAAGTGAGAAATCTGAACTGAGAAGTAAAATCAGTTCTTTGCTGAGGGCGGAGGATGACGATTGGGATAAGCTGCTGAAACTCACTCTTGAGAAAGATTTTTCTCCAGAAAATGTACAGGAAAAACTGCTTCAAAATCTTTTGAAAGATAAGTTACTTGCATGGCTCCTTCAAAAAGTCATGGAAGATGGGAAAGGCCCTAATGTATTGGATGAGGGTGGCCAAGGAGTACTTCATCTTGCTGCTGCTCTTGGCTATGATTGGGCCTTACAACCCACAGTAGTTGCCGGTGTAAATGTGAACTTCCGCGATTTAAATGGATGGACAGCTCTTCATTGGGCTGCATTTTGTGGCAGGGAGCTCACAGTTGCTTCTCTCATCTCTCTTGGGGCAGCACCTGGAGCACTGACTGATCCAAGCCCAGAACATCCTTCTGGTAGAACACCAGCTGACCTGGCTTCTGCAAATGGTCACAAAGGAATTGCAGGGTATCTTGCAGAATCTTCAATAAGCGTGCAACTGTTATCTCTTGATTTGAACAGGGACAAGACAGAAAATTCTGGGTCAAAAGTAGTACAAAGAGTTCAACACAATAATGCTGAAGTTAATGATGATCGCCTATCATATGAACTGTCACTGAAAGATTCATTGGCAGCAGTTTGTAATGCCAGCCAGGCTGCTGCTCGTATTCATGAAGTTTATAGAGTGCAGTCTTTCCAGAGAAAACAACTGAAAGAATATGGTGAAGATAAATTTGGAATATCTGATGAAGATGCTCTTTCCCTTATAACTGTAAATCTACACAAGAAGGGACAACGCAATGAGCCTGTACATGAAGCTGCAATACGAATCCAGAATAAATTCCGCAGTTGGAAGGGCAGAAAAGAATTTTTGATGATTCGGCAAAGAATAGTTAAAATTCAGGCTCATGTAAGGGGGCACCAGGTTAGGAAGAACTATGGAAACATTATTTGGTCAGTTGGAATTTTGGAAAAAGTTATTTTGCGCTGGCGCCGAAAAGGTAGTGGTTTGCGTGGATTTAGATCAGAAGCTGCTCCTGAGGGGACTATGGTACAAGATACACAGTGCAAGGAAGATGAGTATGATTTCTTGAAAGAAGGCAGAAAGCAAACAGAGGAAAGGTTGCAGAAAGCCCTATCAAGGGTGAAGTCAATGGTTCAGTATCCAGAGGCAAGAGACCAATACCATAGGCTGTTGAATGTTGTAACTGAGATCCAAGAAAATCAGGAAAAACATCATAGGCGTTCAGAAGAGAGAAGAGAATTTGATAACATCTATGATCTTGAAACTTTGCTGGACGAGGATACTTTCATGCTTACAGTCATTTAG 3174 0.4083 METGIEQILIEAQHRWLRPAEICEILSNYKMFHIAPEPALMPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVREAHERLKAGSVDVLHCYYAHGEENENFQRRTYWMLEEELSHIVLVHYREVKATKAKFRDAAKENQESLPYAQVDKLPGPATKEISLSCSLDPNNYQVPSQTIDTTSMNSTQATEYEEAESALNNYASSEDYSFLETQNPVVKKIPDPHCPLQFINEQEKLCGTPGMNHTKLSQAAKINDIHNVRLAYEPPQHLGFSMWEYVLKNNGRSQYVPFQPVLPEIETDNMGINSNPSMRDEILRSNFTTNTTEENEKKNIVQVEGHWKVMDELDELDPQISLEHCLVYQDKPKVLMRDDPQEKLEKIKSDMETNRSLDGIEDTYFTLKKTLLDGSLAEEGLKKLDSFNQWMSKELGDVEESKTPSSTFSAYWGTVESENDVDNATIPSQVHLDTYALDPSISHDQLFTIIDFSPSWTFEGSEIKILIYGQLLRSLQEAEQCKWSCMFGEVEVPAQIIDNGVLSCYTPPHKSGRVPFYVTCSNRLACSEIREFEFRDNYTQEVNNAAEQRDSIFYTFSVRFGELLYLGHALPQNLDPISVSEKSELRSKISSLLRAEDDDWDKLLKLTLEKDFSPENVQEKLLQNLLKDKLLAWLLQKVMEDGKGPNVLDEGGQGVLHLAAALGYDWALQPTVVAGVNVNFRDLNGWTALHWAAFCGRELTVASLISLGAAPGALTDPSPEHPSGRTPADLASANGHKGIAGYLAESSISVQLLSLDLNRDKTENSGSKVVQRVQHNNAEVNDDRLSYELSLKDSLAAVCNASQAAARIHEVYRVQSFQRKQLKEYGEDKFGISDEDALSLITVNLHKKGQRNEPVHEAAIRIQNKFRSWKGRKEFLMIRQRIVKIQAHVRGHQVRKNYGNIIWSVGILEKVILRWRRKGSGLRGFRSEAAPEGTMVQDTQCKEDEYDFLKEGRKQTEERLQKALSRVKSMVQYPEARDQYHRLLNVVTEIQENQEKHHRRSEERREFDNIYDLETLLDEDTFMLTVI 1057
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151827g00004 1057 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 879 934 IPR027417 -
Stsc151827g00004 1057 SMART ANK_2a 714 743 IPR002110 GO:0005515
Stsc151827g00004 1057 SMART ANK_2a 753 782 IPR002110 GO:0005515
Stsc151827g00004 1057 Pfam IQ calmodulin-binding motif 910 928 IPR000048 GO:0005515
Stsc151827g00004 1057 Pfam IQ calmodulin-binding motif 886 905 IPR000048 GO:0005515
Stsc151827g00004 1057 Gene3D - 639 809 IPR036770 -
Stsc151827g00004 1057 SUPERFAMILY E set domains 478 565 IPR014756 -
Stsc151827g00004 1057 FunFam Calmodulin-binding transcription activator 2 472 569 - -
Stsc151827g00004 1057 Pfam Ankyrin repeats (3 copies) 686 780 IPR002110 GO:0005515
Stsc151827g00004 1057 Gene3D - 883 931 - -
Stsc151827g00004 1057 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 5 1023 - -
Stsc151827g00004 1057 Pfam CG-1 domain 11 124 IPR005559 GO:0003677
Stsc151827g00004 1057 Coils Coil 976 996 - -
Stsc151827g00004 1057 ProSiteProfiles Ankyrin repeat profile. 714 746 IPR002110 GO:0005515
Stsc151827g00004 1057 ProSiteProfiles CG-1 DNA-binding domain profile. 5 131 IPR005559 GO:0003677
Stsc151827g00004 1057 Pfam IPT/TIG domain 478 557 IPR002909 -
Stsc151827g00004 1057 SUPERFAMILY Ankyrin repeat 663 775 IPR036770 -
Stsc151827g00004 1057 ProSiteProfiles IQ motif profile. 886 914 IPR000048 GO:0005515
Stsc151827g00004 1057 ProSiteProfiles IQ motif profile. 908 932 IPR000048 GO:0005515
Stsc151827g00004 1057 Gene3D Immunoglobulins 472 568 IPR013783 -
Stsc151827g00004 1057 SMART CG_1_2 8 126 IPR005559 GO:0003677
Stsc151827g00004 1057 SMART iq_5 907 929 IPR000048 GO:0005515
Stsc151827g00004 1057 SMART iq_5 884 906 IPR000048 GO:0005515
Stsc151827g00004 1057 FunFam Calmodulin-binding transcription activator 2 884 932 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151827g00004 Stsc-Chr151827 4996 10295 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151827g00004 49 1054 CAMTA Transcription Factor Family AT2G22300 48.942 0.0 878
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Stsc151827g00004 Ank_2 9.8e-07 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151827g00004 K21596 - gmx:100798875 1491.86