Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151822g00003 ATGGGTTTGAAGAAGGGACCATGGACTGCTGAAGAAGATCAGATATTGATATCTTTCATTAATAGATATGGCCATGGAAACTGGCGTGCACTTCCTAAACAAGCTGGTTTGTTAAGGTGTGGCAAGAGTTGCAGGCTTCGTTGGATAAATTACCTGAGGCCAGATATTAAAAGAGGGAAATTCTGCAAGGAAGAGAGGAAGATACCATTCTCAAGCTACATGCAGTTCTTGGAAATAGCAAGATTACAGGGTCGTACAGATAATGAAGTAAAGAACTTTTGGCACACTCATTTGAAGAAAAGGATTGAGAAAAGTGAAGTGCACAATAAATACTCATATCCCTCACAAATCATCACCATGCCAAGAGTAGTAGCAGCAGCAATTGCACCAAGTAGTGCTGCTTCTAGCTTCAATGGGAAGAAGGTGGTGATTGCCAACGATGGTTTATCCTCAACCTCAAGGAATGGAACAAGTTCACCTAATAATATCATTGCAGGACCAGGATTATGCAGTGCAATAGCCTCCTCTTGTGATGATATACTAGTTCAGGTGAAACCATGGGAAATCATAATCATGATGGAATTTTGGTACAATATATTCATCAAATCAGGACAGCTATCTTAA 624 0.4006 MGLKKGPWTAEEDQILISFINRYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGKFCKEERKIPFSSYMQFLEIARLQGRTDNEVKNFWHTHLKKRIEKSEVHNKYSYPSQIITMPRVVAAAIAPSSAASSFNGKKVVIANDGLSSTSRNGTSSPNNIIAGPGLCSAIASSCDDILVQVKPWEIIIMMEFWYNIFIKSGQLS 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151822g00003 207 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 127 - -
Stsc151822g00003 207 Pfam Myb-like DNA-binding domain 5 52 IPR001005 -
Stsc151822g00003 207 Gene3D - 75 118 - -
Stsc151822g00003 207 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 56 IPR017930 -
Stsc151822g00003 207 Gene3D - 4 57 - -
Stsc151822g00003 207 ProSiteProfiles Myb-like domain profile. 1 52 IPR001005 -
Stsc151822g00003 207 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 80 102 IPR017930 -
Stsc151822g00003 207 CDD SANT 7 52 IPR001005 -
Stsc151822g00003 207 SMART sant 4 54 IPR001005 -
Stsc151822g00003 207 SMART sant 57 100 IPR001005 -
Stsc151822g00003 207 FunFam Myb transcription factor 2 73 - -
Stsc151822g00003 207 SUPERFAMILY Homeodomain-like 1 94 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151822g00003 Stsc-Chr151822 15865 16800 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151822g00003 1 105 MYB Transcription Factor Family AT2G31180 64.545 1.24e-47 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Stsc151822g00003 Myb_DNA-binding 1.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151822g00003 K09422 - gmx:102663040 203.756