Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151817g00003 ATGGATCTTGCACAGAAGAAGGAGTTGCTAGCCATCATAGGAACAATAACACACAGCGAAGAATCTTTGGCAAGTAAAATTAATAACGCTACGAAGAACATTCCTATACTGTCTCTATCTTCTCCTGCAGCAGCTAACACACAGTTACCTTCTTCTCCATTGCCACAACTAATCCAATTTGGTGATGACATCAAGGCTCACATGCAATGCCTTGTAGGCATTGTAAGACGCTTCAAATGGCAAAGAGTGACAACAATCTATGAACTTAACAGTGGATTTTCTTATGATCCAAGTGCATTACTTGACCTCTCCGATTCTCTTCGGCATGTCGGATCTGAGATTGATAACCATTTAGCCTTGCCTTCCTTGTCCTCCTTGTCTTCTCAATCCGAACTAAAATCTAGAATCGAAAATGAGCTTAGCCAACAAAAGAATAAGAAGAACAACATGGTCTTCTTGATTGTTCACTCTTCTTTAGAGTTAGCAATCATGCTTTTCGAGAAAGCGAAACAAATGGGTATGATGGAGAAAGGATATGTATGGGTCATCCCAAACGAAGTTGCCGGCCTTCTTGATTCATTTAATTCATCCGTTATCTCTAGCATGCAAGGTGTTATTGGGTTCAAAAAACAACTCATGGAAACAAGCGAATCATATAGAAACTTCAAGTTCAAATTCCGGAGAAGTTTTGCGTTAGAGTACCCGGAAGAAGAGTACACTAAGTGTTTTTGCACTTCAAGCTTATGA 747 0.3976 MDLAQKKELLAIIGTITHSEESLASKINNATKNIPILSLSSPAAANTQLPSSPLPQLIQFGDDIKAHMQCLVGIVRRFKWQRVTTIYELNSGFSYDPSALLDLSDSLRHVGSEIDNHLALPSLSSLSSQSELKSRIENELSQQKNKKNNMVFLIVHSSLELAIMLFEKAKQMGMMEKGYVWVIPNEVAGLLDSFNSSVISSMQGVIGFKKQLMETSESYRNFKFKFRRSFALEYPEEEYTKCFCTSSL 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151817g00003 248 Coils Coil 126 146 - -
Stsc151817g00003 248 FunFam Glutamate receptor 67 240 - -
Stsc151817g00003 248 Pfam Receptor family ligand binding region 5 223 IPR001828 -
Stsc151817g00003 248 PANTHER OS06G0188250 PROTEIN 2 239 - -
Stsc151817g00003 248 Gene3D - 63 241 - -
Stsc151817g00003 248 SUPERFAMILY Periplasmic binding protein-like I 2 234 IPR028082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151817g00003 Stsc-Chr151817 19976 20724 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151817g00003 1 235 Ion Channels AT2G29100 26.360 4.11e-20 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151817g00003 - - aip:107605043 298.13