Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151817g00002 ATGGCATTTTGGTCTCCAATAAGTGGGTTTTCTAAAAACTCTGTAAGACGTAAGGCTCTTGAGGAAATATCACTTAAAATAGGAGTACCTGCAAATAGTGCCTTTGCTCAGTTTGTGAATGTCACCTATGGTCAAAGTAAGAATGAACCTTCCATAACTGGTTTTTCAATAGATGTATTCAGAGCAGCTACTAAAAATCTTTCATATCACTTGCCCAATAAGTTTGTTCCCTTCCATGGCACCTACGACGATATGGTTAATGAAGTTAACAATAAGACATTAGATGCTGCTGTTGGAGATATATCAATATTGGCATATAGATATCAGTTAGTTGAGTTCTCTCAACCATATGTTGAGTCTGGGCTTTGCATGGTAGTGATTGAGAAGCCGAAAAAATCAAAACTGACATGGATGTTTTTGAATGCATTCACAAAAGACATGTGGTTGATGATGGCAGCAATGCACATTTTTGTTGGATTTGTCATTTGGCTAATTGAACTCCAAGTCAATGAAGAACTACAAGGGCTGGGGGAGATGCTTTGGTTTTTAGTCACAGTAATATTCTTTGCACATAGAGAGCCAATAAGAAGACCATTGGCTCGAACTGTGTTGGCACCATGGTTATTTGTTATCCTAATTGTAAGTAGTAGCTTCACAGCAAGTCTTACTTCCGTGATGACTGTATCGAAGCTTGAACGGTCAGTGTTGGATATTCAAACACTTCAGAAGAGAAATGCCTCAGTTGGTTGTGATAGGAATTCATTTATCGTTAAGTATTTGATTGACGTACTCAAATTCAAAGATGAGAACATTAGAAGAATGAATTCCAGTGATGATTACCCTGCAGCCTTTAAGAATAAAGTGATTGAAGCAGCTTTCTTTGTCGTCCCTCATGCTAAAGTCTTAATCGCAAAGTACTCATGTGAAGGCTTCGTCATAGCACCAGGAAGCACCTTCATGCTTTGTGGCTTTGGTTTTGTGGGTTCCTAA 990 0.3848 MAFWSPISGFSKNSVRRKALEEISLKIGVPANSAFAQFVNVTYGQSKNEPSITGFSIDVFRAATKNLSYHLPNKFVPFHGTYDDMVNEVNNKTLDAAVGDISILAYRYQLVEFSQPYVESGLCMVVIEKPKKSKLTWMFLNAFTKDMWLMMAAMHIFVGFVIWLIELQVNEELQGLGEMLWFLVTVIFFAHREPIRRPLARTVLAPWLFVILIVSSSFTASLTSVMTVSKLERSVLDIQTLQKRNASVGCDRNSFIVKYLIDVLKFKDENIRRMNSSDDYPAAFKNKVIEAAFFVVPHAKVLIAKYSCEGFVIAPGSTFMLCGFGFVGS 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151817g00002 329 FunFam Glutamate receptor 21 135 - -
Stsc151817g00002 329 Gene3D - 135 276 - -
Stsc151817g00002 329 FunFam Glutamate receptor 136 269 - -
Stsc151817g00002 329 SMART GluR_14 24 329 IPR001320 GO:0015276|GO:0016020
Stsc151817g00002 329 Pfam Ligand-gated ion channel 145 253 IPR001320 GO:0015276|GO:0016020
Stsc151817g00002 329 Pfam Bacterial extracellular solute-binding proteins, family 3 49 313 IPR001638 -
Stsc151817g00002 329 SUPERFAMILY Periplasmic binding protein-like II 14 326 - -
Stsc151817g00002 329 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 2 326 IPR015683 -
Stsc151817g00002 329 Gene3D - 18 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151817g00002 Stsc-Chr151817 18058 19839 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151817g00002 25 329 Ion Channels AT4G35290 38.095 2.51e-61 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151817g00002 - - aip:107605043 503.056