Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151812g00002 ATGGGGAAAACACCATGCTGTGATAAACATGGAGTGAGAAGAGGTGCTTGGACTCCTGAAGAAGATGAAGCATTGGTTGAATACATTAAGAAGCATGGCCATGGAAGTTGGAGAACACTCCCAAAGCAAGCAGGTCTCCTTCGATGCGGGAAAAGCTGTCGTCTAAGGTGGATAAATTACCTACGCCCTGATATAAAGCGCGGTCCGTTTACTACTGAAGAAGAAGGTGCAATCATTCAGCTTCATGGCATGCTTGGAAACAGGTGGGCTGCTATAGCATCCCATCTTCCTGGAAGAACAGACAATGAAATCAAGAACTTTTGGAACACACAACTGAAGAAGCGCGTGCCTCGATCCTCTTTCACTCCTGATCATACTAATCTTAAATCCGAATCTCCTTCCACGCGCCATATGGTGCAATGGGAAAGCGCTAGAGTTGAAGCTGAGGCAAGGTTGTCATTGGAATCCTCATTGCATAATTCATTCTCAGCAAGCAAATCATACCAGGATCACTTTCTCCAGCTCTGGCATTCTGAGGTTGGACAGTCGTTTCGCGTGATCAAGGCAAAAGAAGAAGAACAACAACAACAAGCAGTTGTGACACAGAATCTTGCATCACAAGCATCATTATCTTCCTCGAAGTTGGAATCGAGTTCTGAAGCAGTCTCACTGAAGCTGAAGAACACTGAAAGCAGTTCCTTTGCAAACATGACACATGGACAACAAAAAAGTAGCAGCAAAGCGAATAAGCCTGAAGATGGCGCGGCCGAGTCAGTTTCAGGCTACTATGATTTTCTTGACACTTCTGATTCTTCCATAAATCATCTGCTAGATGTGCCTGATGGTGAAGTGTTATTCTTAGGACAGAATGACAGTTTCTTCAATAACACCATTGATGGTAGATGTGAGTAA 912 0.4419 MGKTPCCDKHGVRRGAWTPEEDEALVEYIKKHGHGSWRTLPKQAGLLRCGKSCRLRWINYLRPDIKRGPFTTEEEGAIIQLHGMLGNRWAAIASHLPGRTDNEIKNFWNTQLKKRVPRSSFTPDHTNLKSESPSTRHMVQWESARVEAEARLSLESSLHNSFSASKSYQDHFLQLWHSEVGQSFRVIKAKEEEQQQQAVVTQNLASQASLSSSKLESSSEAVSLKLKNTESSSFANMTHGQQKSSSKANKPEDGAAESVSGYYDFLDTSDSSINHLLDVPDGEVLFLGQNDSFFNNTIDGRCE 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151812g00002 303 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Stsc151812g00002 303 FunFam Myb transcription factor 11 67 - -
Stsc151812g00002 303 CDD SANT 16 61 IPR001005 -
Stsc151812g00002 303 CDD SANT 69 110 IPR001005 -
Stsc151812g00002 303 MobiDBLite consensus disorder prediction 232 255 - -
Stsc151812g00002 303 Gene3D - 69 116 - -
Stsc151812g00002 303 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Stsc151812g00002 303 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Stsc151812g00002 303 SMART sant 13 63 IPR001005 -
Stsc151812g00002 303 SMART sant 66 114 IPR001005 -
Stsc151812g00002 303 MobiDBLite consensus disorder prediction 118 138 - -
Stsc151812g00002 303 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Stsc151812g00002 303 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Stsc151812g00002 303 MobiDBLite consensus disorder prediction 232 251 - -
Stsc151812g00002 303 Gene3D - 14 66 - -
Stsc151812g00002 303 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 238 - -
Stsc151812g00002 303 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Stsc151812g00002 303 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151812g00002 Stsc-Chr151812 4390 5841 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151812g00002 1 293 MYB Transcription Factor Family AT3G61250 50.637 3.12e-96 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc151812g00002 Myb_DNA-binding 6.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151812g00002 K09422 - gmx:100807142 383.259