Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151811g00004 ATGGAAACAAACAACAATAGAGTCTGCAAAATCTGCAGTAAGTGTTTCTCCAGCGGAAGAGCCATGGGAGGCCACATGAGATCTCACTTAGTCAAATTGCCAATACCTCCCAAGCCTGACCCAGAGAATCAAGCACTTGACAACTCTACCAAGTTAACCAACCATGCAACTGAAGCTCCTTCCTCACTGAATTTCCATCCCGAAGGGAAACCAGCACAAAAATTTCAATCTTTGAAACACAGCTACTTAGCCTTTTTGTCAAGCTCAAACAAAAAAAATAGATTTCTGCCTTGCCCTAAAAACCCAACCCGCAAAAGATCCAACAGCCGCCGACACTCTATTATAGGGGGTGAGAAAAGATCTGAACTGAAACAAGAGAGTTCAACATCTGAAACTCTTCCAGCAGAAGAAGCAGCTAGGTCCTTGATATTGCTTTCCAAAGATAATTGGCCGGCAAGAAAAGAGATCAAGACACAAGAAATGAAGGGAGCCAACCAAATGTTGACAAAAGATAATGAAAACGATAAAGATGCCTCACATGTTCAAACTCCCACTCAAGTTAAGTTCAAGTGTTCTGATAAAAGAGTGGTCGAGTGCCCATACTGCTCCAAGATGTTCAAATCTACTCAAGCACTCGGTGGGCACAAAAGGGTACACTCAACTATGATTGCTAATGCTCACAACAAATTTGTAGACAAGTCGCTAGACCCTAATGTTGCAGCTTTTAGAAATGGTGTCAATGAAGAGCATCGTAGCAATTTGACTACATGGCTTTAA 777 0.4196 METNNNRVCKICSKCFSSGRAMGGHMRSHLVKLPIPPKPDPENQALDNSTKLTNHATEAPSSLNFHPEGKPAQKFQSLKHSYLAFLSSSNKKNRFLPCPKNPTRKRSNSRRHSIIGGEKRSELKQESSTSETLPAEEAARSLILLSKDNWPARKEIKTQEMKGANQMLTKDNENDKDASHVQTPTQVKFKCSDKRVVECPYCSKMFKSTQALGGHKRVHSTMIANAHNKFVDKSLDPNVAAFRNGVNEEHRSNLTTWL 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151811g00004 258 ProSiteProfiles Zinc finger C2H2 type domain profile. 197 220 IPR013087 -
Stsc151811g00004 258 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 192 IPR044303 GO:0006355
Stsc151811g00004 258 MobiDBLite consensus disorder prediction 93 135 - -
Stsc151811g00004 258 Gene3D Classic Zinc Finger 120 222 - -
Stsc151811g00004 258 MobiDBLite consensus disorder prediction 111 126 - -
Stsc151811g00004 258 SMART c2h2final6 197 219 IPR013087 -
Stsc151811g00004 258 SMART c2h2final6 7 29 IPR013087 -
Stsc151811g00004 258 MobiDBLite consensus disorder prediction 55 74 - -
Stsc151811g00004 258 ProSiteProfiles Zinc finger C2H2 type domain profile. 7 34 IPR013087 -
Stsc151811g00004 258 Pfam C2H2-type zinc finger 8 29 - -
Stsc151811g00004 258 Pfam C2H2-type zinc finger 198 219 - -
Stsc151811g00004 258 ProSitePatterns Zinc finger C2H2 type domain signature. 9 29 IPR013087 -
Stsc151811g00004 258 SUPERFAMILY beta-beta-alpha zinc fingers 8 219 IPR036236 -
Stsc151811g00004 258 ProSitePatterns Zinc finger C2H2 type domain signature. 199 219 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151811g00004 Stsc-Chr151811 17017 18301 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151811g00004 9 234 C2H2 Transcription Factor Family AT1G02030 31.008 1.56e-15 72.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc151811g00004 zf-C2H2_6 2.1e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151811g00004 - - adu:107495627 377.867