Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151789g00003 ATGATGCAAATCTCCTCCACCAACAAGTACTTGCCTGAATTTGGAATGGATGATTCTGTTTTCTTCCATAATCAATACCCAGCAATGATGGATCCATCATCATGGCCCCATCAGCTTCTTGATGATATTGACTTCAACCAAATCCAAGAATCCTTCTCTTCAGCCTCATCCCCAAAGAGCTTCTCCTCAAACAAGCGCTGCTTCTCAAACTCTCCTCCCCCGCCCGCCGCCGGAACCACCACCACCATGCCACAAAACTCTTTCTCTTCACCCATTGAAAGACCAACTAAGCTACAAAAAACCACTACCACCACCACCACCACCACCATTACCGGCAAGAATGATTTCATGGTTCCCAAGGCTTCTTCCTCTTCTTCTTCCCAAATCATCTCATTCGAGCAGCACTCCAACGCTTCTTCTTCTGTTGCTTCCTATAATAACCACCATCATCAGCAACTCTACAATAACAAACCTTCTTCCTCCGACCATGTTTTGAAGCCCAAGATTGAGAGTGTGTGCAGTGAGAGCTTCGATTTTGCCTCTGTGGTTTCTCAAGCTGATTACCTCAGTGGTTATGGTGATAATAACGCCAAAGGCTCCGCGGCGGCGACCGCTACCAGAAACCCAACTCAGGCTCAAGATCACGTCATAGCCGAGAGAAAACGAAGGGAGAAGCTCAGCCAGAGGTTCATTGCGCTTTCCGCCATTGTTCCTGGCCTCAAGAAGATGGACAAGGCTTCAGTATTGGGAGATGCCATCAAATATCTGAAGCAACTTCAAGAGAAAGTGAAGACTCTAGAAGAGCAAGTTGCGGAGAAAACCGTCGAATCCGCGGTTTTCGTGAAGAGATCCATCGTCTTTGCAGATGACGATGGATTCTCTTCGGACGGAAACTCGGATCAGCAAATCCCGGAGATAGAAGCAAGAATTTCAGGCAAAGACGTTCTGATTAGAGTCCACTGTGACAAACACAGTGGAAGAGTGCCAAAAATAATGAACGAGATTGAGAATTATGACCTCACTGTTCAAAGCAGTAGCTTCTTGCCCTTTGGGAATAACTCACTTGACATCACCATTGTTGCTCAGATGAACAAGGAATGCACCGTGACAGCCAAAGATATAATAAAAGGCTTAAATCAATCTTTGAAGCAGCTCGTTTGA 1161 0.4599 MMQISSTNKYLPEFGMDDSVFFHNQYPAMMDPSSWPHQLLDDIDFNQIQESFSSASSPKSFSSNKRCFSNSPPPPAAGTTTTMPQNSFSSPIERPTKLQKTTTTTTTTTITGKNDFMVPKASSSSSSQIISFEQHSNASSSVASYNNHHHQQLYNNKPSSSDHVLKPKIESVCSESFDFASVVSQADYLSGYGDNNAKGSAAATATRNPTQAQDHVIAERKRREKLSQRFIALSAIVPGLKKMDKASVLGDAIKYLKQLQEKVKTLEEQVAEKTVESAVFVKRSIVFADDDGFSSDGNSDQQIPEIEARISGKDVLIRVHCDKHSGRVPKIMNEIENYDLTVQSSSFLPFGNNSLDITIVAQMNKECTVTAKDIIKGLNQSLKQLV 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151789g00003 386 MobiDBLite consensus disorder prediction 54 120 - -
Stsc151789g00003 386 FunFam Basic helix-loop-helix family protein 207 276 - -
Stsc151789g00003 386 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 214 278 IPR036638 GO:0046983
Stsc151789g00003 386 Coils Coil 249 276 - -
Stsc151789g00003 386 Gene3D - 202 274 IPR036638 GO:0046983
Stsc151789g00003 386 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 210 259 IPR011598 GO:0046983
Stsc151789g00003 386 CDD bHLH_AtNAI1_like 212 284 - -
Stsc151789g00003 386 PANTHER BHLH TRANSCRIPTION FACTOR 42 382 - -
Stsc151789g00003 386 Pfam Helix-loop-helix DNA-binding domain 213 260 IPR011598 GO:0046983
Stsc151789g00003 386 SMART finulus 216 265 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151789g00003 Stsc-Chr151789 19368 22231 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151789g00003 125 386 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 44.030 9.10e-61 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc151789g00003 HLH 3.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151789g00003 - - adu:107482661 546.969