Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151778g00004 ATGGCCATGGCTGCTCTCCGTCGCGAAGGGAGGCGATTCGCCACCCCGCTCCTCTCTTCTCCTGTCCGCTCCTCTGTCATCTCTCACTCTCAAGAAGAACTTCCCAATGGAGTGCGCTCTATTTCGACTCAAATTGTGAGAAACAGGATGAAGAGTGTTAAGAATATCCAGAAGATCACAAAGGCAATGAAGATGGTTGCAGCCTCTAAGCTTAGAGCTGTTCAAACCAGAACTGAAAACTCCCGTGGCCTCTGGCAGCCATTCACTGCCCTTCTGGGTGACGCCCCCAGTGTTGATGTCAAGAAGAGCGTTATTGTTACCATTTCTTCAGACAAAGGTCTCTGTGGTGGTATCAATTCCACATCTGTCAAGATAAGCAGGATTTTGCACAAATTGAGCTCTGGGCCTGAGAAAGAGACAAAGTATGTCATATTGGGTGAGAAGGCTAAGGCTCAATTGATACGTGATTCCAAGCAAGACATCTCTCTCAGCATAACTGAGCTGCAGAAGAATCCCCTGAACTATACTCAGGTTTCGGTCTTGGCAGATGACATTCTAAAGAATGTGGAGTTTGACGCCTTAAAGATTGTGTTCAACAACGTACCCAAATTGTTACTTCAGTGGACCTTTGCCCCTACATGTTATGCAATTATGGAGAGAGAGTCTGAAGCTGGGGGAAAGCTTGGGGAGTTAGACTCTTATGAAATCGAAGGTGCTGAGACAAAAGGAGAAGTTCTTCAGAATCTGGCAGAGTTCCAGTTTTCTTGTATCTTGTTCAATGGAGTTTTGGAGAATGCTTGCAGTGAACAGGGAGCAAGAATGTCTGCCATGGACAGCTCTAGCAGGAACGCTGGAGACATGCTTGATCGTCTCACTCTTACCTATAACAGAACTCGTCAAGCATCAATCACCACTGAATTGATTGAGATTATTTCTGGAGCTTCAGCACTGGAAGGTTAA 960 0.4594 MAMAALRREGRRFATPLLSSPVRSSVISHSQEELPNGVRSISTQIVRNRMKSVKNIQKITKAMKMVAASKLRAVQTRTENSRGLWQPFTALLGDAPSVDVKKSVIVTISSDKGLCGGINSTSVKISRILHKLSSGPEKETKYVILGEKAKAQLIRDSKQDISLSITELQKNPLNYTQVSVLADDILKNVEFDALKIVFNNVPKLLLQWTFAPTCYAIMERESEAGGKLGELDSYEIEGAETKGEVLQNLAEFQFSCILFNGVLENACSEQGARMSAMDSSSRNAGDMLDRLTLTYNRTRQASITTELIEIISGASALEG 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151778g00004 319 PIRSF ATP_synthase_gamma 10 317 - -
Stsc151778g00004 319 Gene3D ATP synthase, gamma subunit, helix hairpin domain 46 314 - -
Stsc151778g00004 319 ProSitePatterns ATP synthase gamma subunit signature. 303 316 IPR023632 -
Stsc151778g00004 319 Pfam ATP synthase 44 317 IPR000131 GO:0015986|GO:0045261|GO:0046933
Stsc151778g00004 319 FunFam ATP synthase gamma chain 272 314 - -
Stsc151778g00004 319 PANTHER ATP SYNTHASE GAMMA CHAIN 28 317 IPR000131 GO:0015986|GO:0045261|GO:0046933
Stsc151778g00004 319 FunFam ATP synthase subunit gamma 66 276 - -
Stsc151778g00004 319 NCBIfam ATP synthase F1 subunit gamma 42 317 IPR000131 GO:0015986|GO:0045261|GO:0046933
Stsc151778g00004 319 PRINTS ATP synthase gamma subunit signature 100 119 IPR000131 GO:0015986|GO:0045261|GO:0046933
Stsc151778g00004 319 PRINTS ATP synthase gamma subunit signature 264 283 IPR000131 GO:0015986|GO:0045261|GO:0046933
Stsc151778g00004 319 PRINTS ATP synthase gamma subunit signature 295 316 IPR000131 GO:0015986|GO:0045261|GO:0046933
Stsc151778g00004 319 PRINTS ATP synthase gamma subunit signature 192 209 IPR000131 GO:0015986|GO:0045261|GO:0046933
Stsc151778g00004 319 Gene3D - 66 276 - -
Stsc151778g00004 319 CDD F1-ATPase_gamma 42 314 IPR000131 GO:0015986|GO:0045261|GO:0046933
Stsc151778g00004 319 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 44 317 IPR035968 GO:0015986|GO:0045261|GO:0046933
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151778g00004 Stsc-Chr151778 15356 18697 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151778g00004 46 317 Primary Pumps ATPases AT1G15700 27.414 2.27e-23 97.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151778g00004 K02136 - rcu:8286653 506.908