Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151772g00005 ATGCTAGACAACAACACCAACACTGCTGCTTCTTCTTCTTCCCATGCCGCTTTTGCATTCTCCGAAAACGCCATCATCCCTAACAAAAGAAAAAGAAGACCCGCTGGAACCCCTGATCCAGATGCGGAAGTGGTGTCTCTATCGCCCAAGACCTTACTGGAATCGGATCGTTACGTGTGTGAGATCTGCAACCAAGGCTTCCAGAGGGACCAGAACCTGCAAATGCATAGGAGGAGGCACAAGGTGCCGTGGAAGCTTCTCAAGAGGGACACCACGGCGGCGCCCGAAGGAGCAGGTGCTACAAGCATGATGAAGAAGAAGGTGTTCGTGTGTCCGGAACCGAGTTGCTTGCACCATGACCCGTGCCACGCACTCGGCGACCTTGTGGGGATCAAGAAACACTTCAGAAGAAAGCACAGCAACCACAAGCAGTGGGTGTGCCACAAGTGCTCCAAGGGTTACGCCGTTCAATCCGATTACAAAGCTCACATCAAAACGTGCGGCACCCGCGGCCATTCATGCGACTGTGGCCGCGTCTTCTCCAGGGTGGAGAGTTTCATAGAACACCAAGATGCGTGCACTGTGAGGCAGCAGCATCGACCAGAGATGCAACCACTGCAACCAGCATGCTCATCAAGAACAGCTTCAAGCACAAGTCCATCCAGTGACGCTAATTTTACCCTACCTCCTTCACTGCATCAAGGACTTCCACTACCAAAACCACCCGATCAACCACCACAACCATCTTCAGACATTCTTCACAGCAACAGTAATACTCACAACTTGGAACTTCAGCTCTTACCCTCTTCAATAAACTCTCATCAAAACCAAGAGACACGCTTGAGACTCGCAATAGGTTCATGCGGTGGTGCTGTCAATGGGAGGGGTATTGAAGAAGAAAGGAACAATAATGTATTGGAAGTCGCAAGGTTGAAGGAGTGTGCTGGAGAGGAGATTAAGTTGGCAATGGCGGAAAAGGCCTATGCAGAAGAGGCAAGGAGAGAAGCGAAACGCCAGACTGAGATAGCTGAGCTTGAGTTTGAGAATGCAAAGAGGATAAGGAAGCAAGCACAAGCTGAGCTTGGAAAGGCTGAAGCTTTGAGGAAGCAAGCCATCAAGAAGATGACTTCTACTCTCATGGAGATCACATGCCATGCTTGCAAGCAAAACTTTCACTCTTCCAACAATAATAATGGGGTTGGCTTTCCATCTGAAGAGACCTCCATTGTAGTGAGTTACATGTCATCAGCAAATAACACTGATGATGGTGAAGCAGAATAG 1281 0.4941 MLDNNTNTAASSSSHAAFAFSENAIIPNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRDTTAAPEGAGATSMMKKKVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCHKCSKGYAVQSDYKAHIKTCGTRGHSCDCGRVFSRVESFIEHQDACTVRQQHRPEMQPLQPACSSRTASSTSPSSDANFTLPPSLHQGLPLPKPPDQPPQPSSDILHSNSNTHNLELQLLPSSINSHQNQETRLRLAIGSCGGAVNGRGIEEERNNNVLEVARLKECAGEEIKLAMAEKAYAEEARREAKRQTEIAELEFENAKRIRKQAQAELGKAEALRKQAIKKMTSTLMEITCHACKQNFHSSNNNNGVGFPSEETSIVVSYMSSANNTDDGEAE 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151772g00005 426 Gene3D Classic Zinc Finger 46 141 - -
Stsc151772g00005 426 Pfam Zinc finger, C2H2 type 58 80 IPR013087 -
Stsc151772g00005 426 Pfam Zinc finger, C2H2 type 146 166 IPR013087 -
Stsc151772g00005 426 Coils Coil 319 374 - -
Stsc151772g00005 426 MobiDBLite consensus disorder prediction 234 248 - -
Stsc151772g00005 426 SUPERFAMILY beta-beta-alpha zinc fingers 57 165 IPR036236 -
Stsc151772g00005 426 MobiDBLite consensus disorder prediction 198 256 - -
Stsc151772g00005 426 SMART c2h2final6 58 80 IPR013087 -
Stsc151772g00005 426 SMART c2h2final6 109 139 IPR013087 -
Stsc151772g00005 426 SMART c2h2final6 145 172 IPR013087 -
Stsc151772g00005 426 ProSitePatterns Zinc finger C2H2 type domain signature. 60 80 IPR013087 -
Stsc151772g00005 426 ProSiteProfiles Zinc finger C2H2 type domain profile. 58 80 IPR013087 -
Stsc151772g00005 426 MobiDBLite consensus disorder prediction 200 229 - -
Stsc151772g00005 426 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 15 396 IPR031140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151772g00005 Stsc-Chr151772 23826 26027 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151772g00005 29 426 C2H2 Transcription Factor Family AT2G01940 58.275 1.08e-150 433
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc151772g00005 zf-C2H2 0.004 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151772g00005 K25871 - gmx:100791007 550.436