Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151764g00003 ATGAGTAGCATGAGGAACATGGGAGATGGTAGGAAAGTGTCGAAAAGTCGACGCTCATCACTTTCAGTTGAGGAAGGTAATGGTGGAAGTAACATGAGAGGAGAAGGTTCTTTGAAAAAAGGTCCTTGGACATCGACGGAGGATGCAATTTTAATAGAGTATGTGAAGAAGCATGGAGAGGGGAATTGGAATGCTGTACAAAGGCATTCAGGACTTGCTCGATGCGGTAAAAGCTGTCGATTAAGATGGGCAAATCATTTGAGACCAGATCTGAAAAAGGGAGCATTCACAGAAGAAGAAGAATGTCGAATCATTGAGCTCCATGCTAAGATGGGAAATAAATGGGCACGAATGGCTGCAGAGCTGCCTGGACGTACAGATAATGAGATAAAGAACTATTGGAACACAAGAATTAAAAGAATGCAACGATCTGGTCTACCAATCTACCCTCCTGACGTATGCTTGCGGGTGAAGCAAGGTAATCAAGAACATATAAACGTTGGTAATAGCTTGACAGACAGAGCCAACCTGCATGATGATCTTTCACAAACAGACACATTGGATATACCAGAGTTAGATTTCAAACACGTTAAGATCTGCCAAGCTCCATCTTATGGAATATCAATTTTTGATATACCTGAAACTACTATGTTCCCTATGATGCATCCTACAAAGCGCCTTCGTGAATCAGAAATGCAATATGCAAATTTGGATGGTTGTATTAGTAGTAATACTGTCCCAATGTTTGAACAGTATGGTGATTACATGTGTGATAAAAGTATCGACCATACTCGACTGTCTTCTCCATCTGGTCCTATTTTGAACACCAGTGATCAATTTCATGGTGATGACACATACGGTAGCCATGAAACTTTAAATGGAAATACTTCATCTTCTATGCCTACATCCGGAGCCATGAAGTTGGAGCTCCCTTCACTCCAATACCTAGAAACTCAACCAGGTATGTGGGACACACCCGCTTCCTCACTTCCATCACTTGAGTCCGTTGACACGTTGTCTCCGATACTCGAGCTAGCTCCTTTGGATCCTGTTTCTCCGCAAAGCAGCAATATTTTGGAACCAATAATCTTCCAACCAAAGCATTTGAATACCAACTTACTACAAGAAACACCTGATAATTGTGTCCCAAGCGAAGTAGGCAATATTTCAACCATGAAGTGTAAGCTGGAATGGGATGAATCAGGGGAGCCAAGTTCTCCCTTAGGTCAATCTTCTGCTTCTGTTTTAACCGACTATACTCCGGTTAGCATGTGCTCCGTGGATGGCCCCCAATCAGTTGAATCTATTCAAGATCATAATAATAAGCACAAACAAGGAGCACAGTTGAAGAATGAAAACATGCATCAAATACACTTCACCAGACCTGATGCTTTACTTGACATGGGTTGGTTTGGGAATAGTGTCAATTACAACGGCGATCAATCTATTATAAAAGATGCCTTTAACACATTTCTTGGTGAACATCCCCATGGTTAG 1497 0.4168 MSSMRNMGDGRKVSKSRRSSLSVEEGNGGSNMRGEGSLKKGPWTSTEDAILIEYVKKHGEGNWNAVQRHSGLARCGKSCRLRWANHLRPDLKKGAFTEEEECRIIELHAKMGNKWARMAAELPGRTDNEIKNYWNTRIKRMQRSGLPIYPPDVCLRVKQGNQEHINVGNSLTDRANLHDDLSQTDTLDIPELDFKHVKICQAPSYGISIFDIPETTMFPMMHPTKRLRESEMQYANLDGCISSNTVPMFEQYGDYMCDKSIDHTRLSSPSGPILNTSDQFHGDDTYGSHETLNGNTSSSMPTSGAMKLELPSLQYLETQPGMWDTPASSLPSLESVDTLSPILELAPLDPVSPQSSNILEPIIFQPKHLNTNLLQETPDNCVPSEVGNISTMKCKLEWDESGEPSSPLGQSSASVLTDYTPVSMCSVDGPQSVESIQDHNNKHKQGAQLKNENMHQIHFTRPDALLDMGWFGNSVNYNGDQSIIKDAFNTFLGEHPHG 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151764g00003 498 MobiDBLite consensus disorder prediction 1 42 - -
Stsc151764g00003 498 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 37 87 IPR017930 -
Stsc151764g00003 498 Pfam Myb-like DNA-binding domain 40 87 IPR001005 -
Stsc151764g00003 498 Pfam Myb-like DNA-binding domain 93 136 IPR001005 -
Stsc151764g00003 498 CDD SANT 95 136 IPR001005 -
Stsc151764g00003 498 FunFam Transcription factor GAMYB 95 141 - -
Stsc151764g00003 498 ProSiteProfiles Myb-like domain profile. 35 87 IPR001005 -
Stsc151764g00003 498 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 25 487 - -
Stsc151764g00003 498 FunFam MYB-related transcription factor 39 92 - -
Stsc151764g00003 498 SUPERFAMILY Homeodomain-like 38 134 IPR009057 -
Stsc151764g00003 498 ProSiteProfiles Myb-like domain profile. 88 138 IPR001005 -
Stsc151764g00003 498 CDD SANT 42 87 IPR001005 -
Stsc151764g00003 498 Gene3D - 39 92 - -
Stsc151764g00003 498 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 88 142 IPR017930 -
Stsc151764g00003 498 SMART sant 39 89 IPR001005 -
Stsc151764g00003 498 SMART sant 92 140 IPR001005 -
Stsc151764g00003 498 Gene3D - 95 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151764g00003 Stsc-Chr151764 6400 8620 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151764g00003 37 494 MYB Transcription Factor Family AT5G06100 36.694 1.64e-80 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc151764g00003 Myb_DNA-binding 2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151764g00003 K09422 - gmx:100800658 589.341