Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151763g00004 ATGTTAAATGTTGATGTGATTGGGAACAAGAAAAGGAAGAGATGTGGGAGGGTTTTCAGGTTCAAGAACTTTGGTGAACCTGGTTACCCTGTTATGTTTAGTGGTCCATTTAGAGAGAATGTGAGTGCACTTCTTGAATATGCGAATTCCGAGAGTAATTTGGGAATGGGAATGCCAATGTGGTCTTTTCAGCTTGAAGTTCATCACCACCCTCCTTTGCATATTTTCTTGTTTGTCATTGAAGAACCAATTGAAGCTTCTTTCAATCGCCACTGCAAGCATTGTCAATATGTTGGGTGGGGCCACCATTTCATTTGCAACAAGAAGTATCATTTCGTATTACCCTCAAAGGAGGCATTGGCTACATGCTCGAGCTGTGAAGGGTGCTGTGATGCCATTGCCGCCATTAACAACAACAACAACAATAATGGTAGGTCCAAATTGATAGAATTGCAGGGACATATGATGCATGGTGTTTTTCACTCAAATGGATTCGGCCATTTGCTATGTGTCAATGGCTTGGAAACCGGTTCCAATTTGGCTGGCAACCAGATCATGGACTTTTGGAATCGTTTGTGCATTGGATTGCAAGCAAGGAAAGTGAGTTTGAATGACACTTCAAAGAAAAGAGGCATGGAACTTAGACTTATAAATGGAATAGCATATAGTGAGCCATGGTTCGGTCGTTGGGGCTACAAATTCGGAAGAGGCTCCTTTGGTGTGACACAATCCATGTACCAAAAAGCCATTGAAGCAATAAGGAGCATGCCACTCTACTTGCTCATACACCACATTGGCGCCAACAATTCCAACAACCACGACGTACCCCTCATTTTCTCACGTTACCAAACCCTGTCCGGTCAATCGCTTGTCACACTCGGCGACCTATTTCGCTACATGCTAGAGCTTAAGTCGCACCTCCCCCGCGAGGCACGAGTTATCGGTAACAATAGTTATAATTGTTCCCTCAACAACACTGGTAGTAGTACTAGTAGTGCAATTGTTGAGTCCAATAATAATAATTGCCGTTGGTCACCTAAGAGGATTGAAATGGCAACAAGGGTAATTGTTGAGGCATTGAAGAGAACAGAGTTTAGATGGATTTCAAGACAAGAAGTTAGGGATGCCGCACGTGCTTACATTGGTGACACTGGTCTGTTGGATTTTGTGCTAAAGTCACTTGGAAACCATGTTGTTGGAAACTACTTGGTAAGAAGAAGCCTAAACCCTGTTACCAAGGTTTTGGAGTATTGCTTAGAAGACATTTCCAATCATGTTTACCCTAATTGCAATAATGAAGGTAGTTTGGCCATCACTAATGGCAATAGTAATACTAACTACAATAATAATAAGATTAAGGATAAGTACAAGATTACAAGGGCCCAACTTATGAAGGACATGCTTTATTTGTACAAGTACATCCTAATTGACCCTAAACCAATGATGGGTTTGGAGTTCCTCTCGGCCATACCATTGGCGGCTAGGATAATTCTCGACACGAAGTTTCTGGTCAGAGACTACTCTGGCGAGGTTCCGGCTTTTGGCATTGAGTTGGGTTCGGACGGTAAACTGAATCTTTATTGCACGATTTTGTTGAGGAACAACTCATCATGCATTGAGGAGTTCTTGAATAAGGCTATGCCACCCTATGAGTGCATCACATTGAGAAGCAATGCTACAATCAATGAATTGAAGTTAGAAGTTGAGAGGAACTTTAGGGAAATCTATTGGGGGTTAAGGGGATTTGTGGTAGAATCAATTGGGAACAATAATTTTAGTGGTAACAATATTATTATTAATAATAATGGGAAAGATATGGTTTTGGGGCTAATTGAAGTGATGGCTGGGAAAATTGTGCTAGAGGGTTGGATTGGTGAAATAATTGGAGTGAATAACAACACGATGTTTGGGCAAATGTGTGAGAGTGATCCAAAGAATGGGATTGTGGAGTGCACTTGTGGAACAAAAGAAGATGATGGGGAGAGGTTGGTGTGTTGTGATATTTGTGAAATTTGGCAGCATACAAGGTGCGTTCGAATCCCAAATGATGAAGAAATTCCTCACATTTTTCTTTGCAAAAGGTGTGAGCAAGAGATTGTTATGTTTCCTTCATTGCCATAA 2121 0.414 MLNVDVIGNKKRKRCGRVFRFKNFGEPGYPVMFSGPFRENVSALLEYANSESNLGMGMPMWSFQLEVHHHPPLHIFLFVIEEPIEASFNRHCKHCQYVGWGHHFICNKKYHFVLPSKEALATCSSCEGCCDAIAAINNNNNNNGRSKLIELQGHMMHGVFHSNGFGHLLCVNGLETGSNLAGNQIMDFWNRLCIGLQARKVSLNDTSKKRGMELRLINGIAYSEPWFGRWGYKFGRGSFGVTQSMYQKAIEAIRSMPLYLLIHHIGANNSNNHDVPLIFSRYQTLSGQSLVTLGDLFRYMLELKSHLPREARVIGNNSYNCSLNNTGSSTSSAIVESNNNNCRWSPKRIEMATRVIVEALKRTEFRWISRQEVRDAARAYIGDTGLLDFVLKSLGNHVVGNYLVRRSLNPVTKVLEYCLEDISNHVYPNCNNEGSLAITNGNSNTNYNNNKIKDKYKITRAQLMKDMLYLYKYILIDPKPMMGLEFLSAIPLAARIILDTKFLVRDYSGEVPAFGIELGSDGKLNLYCTILLRNNSSCIEEFLNKAMPPYECITLRSNATINELKLEVERNFREIYWGLRGFVVESIGNNNFSGNNIIINNNGKDMVLGLIEVMAGKIVLEGWIGEIIGVNNNTMFGQMCESDPKNGIVECTCGTKEDDGERLVCCDICEIWQHTRCVRIPNDEEIPHIFLCKRCEQEIVMFPSLP 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151763g00004 706 CDD PHD_MMD1_like 650 695 - -
Stsc151763g00004 706 Pfam PHD-finger 651 697 IPR019787 -
Stsc151763g00004 706 SUPERFAMILY FYVE/PHD zinc finger 637 698 IPR011011 -
Stsc151763g00004 706 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 12 700 - -
Stsc151763g00004 706 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 637 700 IPR013083 -
Stsc151763g00004 706 ProSitePatterns Zinc finger PHD-type signature. 651 695 IPR019786 -
Stsc151763g00004 706 SMART PHD_3 650 696 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151763g00004 Stsc-Chr151763 22366 26477 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151763g00004 10 706 PHD Transcription Factor Family AT5G22260 50.284 0.0 668
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Stsc151763g00004 PHD 5.3e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151763g00004 K26271 - gmx:100780210 1076.23