Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151759g00008 ATGCCACAGATAATCTCCAAAGTGGTCAACCACACAGTCCATGAAGTCAAATCTTCATCCAACAACTGCACCACCATAATCAAGCATCTCCAAAACACTCTCAACACACTTGAGAAGAGAGCCTTAGATGATTGCCTCAAACTCTTTGATGACACCATAGCAGAACTCAACACCACCATTCTTGATCTCTCAAAAAAGCCATCACCATCATCATCATCATTATCATCCAGCAATGACTTGCAAACTCTGCTAAGTGGAGCAATGACTAATCTGTACACTTGTCTTGATGGTTTCTCACAAAGCAAAAATGGGAATGCTGTGAGGGGGTTGATAGAGCAGAAAGTGATTGAGATATCACACCATGTTAGTAACTCACTGGCAATGCTGAACAAAGTGAAGAGAAGTTTGAAGAAAGAAGAACAAGAGGTGTTTGCTGAGTATGGGAGAATGAAGAAAGGGTTCCCTTCTTGGATTTCTGCTAAGGATAGGAAGCTTCTAGAAGGTAGAAATGTGAATGAGAGTAAAGTTGATGTTGTTGTGGCTAAAGATGGTTCTGGAAATTTCACTACTATTGGTGAAGCTGTAGCAATGGCTCCCAATTCCAGCACAACCAGGTTTGTGATATACATAAAAAGTGGAGCATACTTTGAGAATGTGGAAGTGATTAGAAAGAAGATTAATTTGATGTTCATTGGAGATGGGATTGGAAGGACAATTGTAAAGGCAAACAGGAATGTTGTGGATGGCTGGACCACTTTTCAATCAGCTACTGTTGCTGTGGTAGGACAAGGTTTCATAGCTAAGGGTATAACCTTTGAGAACTCAGCCGGGCCAGCCAAGCACCAAGCAGTGGCACTCCGAAGCGGCGCCGACTTCTCGGCCTTCTACAAATGTAGCTTCGTCGGCTACCAAGACACACTCTATGTCCACTCCCTCCGCCAATTTTACCGCGAATGCGATATTTATGGTACAGTTGACTTTATATTCGGCAATGCAGCCGTAGTCTTCCAAAATTGCAACCTCTATGCACGTAAACCTAACGAGAATCAAAAGAACTTGTTCACAGCACAAGGCAGAGAAGATCCGAATCAAAACACCGGAATTTCAATCTTGAATTGTAAGATCGCCGCCGCGTCTGACCTAATTCCAGTCAAATCGACGTTCAAAAGCTACTTAGGAAGGCCATGGAAACAATACTCTAGGACAGTGTACCTTAGATCTTACATGGAGGATTTAGTTGACCCTAAAGGATGGTTGGAATGGAATGAGACATTTGCATTGGACACACTTTATTATGGTGAGTATATGAATAGAGGACCAGGTTCAAACACAAGTGGGAGAGTTAATTGGCCAGGTTTTAGGGTTATTAATAGTTCTAATGAAGCAAGCCAATTCACTGTTGGCCAATTCATACAAGGTAGTGAATGGTTAAACAACACTGGCATTCCATTTTTCTATAATTTGAGTTAA 1470 0.4184 MPQIISKVVNHTVHEVKSSSNNCTTIIKHLQNTLNTLEKRALDDCLKLFDDTIAELNTTILDLSKKPSPSSSSLSSSNDLQTLLSGAMTNLYTCLDGFSQSKNGNAVRGLIEQKVIEISHHVSNSLAMLNKVKRSLKKEEQEVFAEYGRMKKGFPSWISAKDRKLLEGRNVNESKVDVVVAKDGSGNFTTIGEAVAMAPNSSTTRFVIYIKSGAYFENVEVIRKKINLMFIGDGIGRTIVKANRNVVDGWTTFQSATVAVVGQGFIAKGITFENSAGPAKHQAVALRSGADFSAFYKCSFVGYQDTLYVHSLRQFYRECDIYGTVDFIFGNAAVVFQNCNLYARKPNENQKNLFTAQGREDPNQNTGISILNCKIAAASDLIPVKSTFKSYLGRPWKQYSRTVYLRSYMEDLVDPKGWLEWNETFALDTLYYGEYMNRGPGSNTSGRVNWPGFRVINSSNEASQFTVGQFIQGSEWLNNTGIPFFYNLS 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151759g00008 489 PANTHER PECTINESTERASE 3 478 - -
Stsc151759g00008 489 Gene3D Invertase/pectin methylesterase inhibitor family protein 1 135 IPR035513 -
Stsc151759g00008 489 Pfam Pectinesterase 177 473 IPR000070 GO:0030599|GO:0042545
Stsc151759g00008 489 NCBIfam pectinesterase inhibitor domain 6 131 IPR006501 GO:0004857
Stsc151759g00008 489 Gene3D - 171 488 IPR012334 -
Stsc151759g00008 489 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 8 132 IPR035513 -
Stsc151759g00008 489 ProSitePatterns Pectinesterase signature 2. 321 330 IPR033131 -
Stsc151759g00008 489 SMART PMEI_2 4 128 IPR006501 GO:0004857
Stsc151759g00008 489 Pfam Plant invertase/pectin methylesterase inhibitor 8 128 IPR006501 GO:0004857
Stsc151759g00008 489 CDD PMEI-like_3 3 131 - -
Stsc151759g00008 489 FunFam Pectinesterase 171 488 - -
Stsc151759g00008 489 SUPERFAMILY Pectin lyase-like 174 486 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151759g00008 Stsc-Chr151759 24055 29030 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151759g00008 3 488 Carbohydrate Esterase AT4G02320 54.839 0.0 561
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151759g00008 K01051 - gmx:100802881 769.615