Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151759g00003 ATGAGAACTTCTTGGGCAGATTCTGCTGACAATTCAGCCACTCGTTCTTCCAATTCCCATGGGCAGTCTAACCGGGCTGCATATGTTCCGCCTCATCTTCGCAACCGGCAATCTGAGCCTCCTGTACCATCGAATTCTGCGGCTGCTATGCCAGCTAATGATCGGTCGAATTATGGTGGTCCAACTGCTTCTTATGGGGGCAGTTCCTTTAATAAGCCTGATCTCGGGCGGCAAGGATATGGCTCGGGTTTTCAGACCGGTGGTGGTGCCTGGAACAGCAATAGAGGAGGAGGAGGGAGGGACCGTGGAAGGCGTGAGGTGAACCCTTTTGAAAATGACGATGCTTCGGATCAATCGTTTGGTGAGGCGGAAAACACAGGGATTAACTTTGATGCTTATGATGATATACCTGTGGAGACTAGCGGCGAAAATGTGCCTCCGCCTGTGAACACATTTGCAGAGATTGACTTGGGGGATACATTGAATCAGAATATAAAGCGCTGCAAGTATGTGAAGCCAACTCCGGTACAGAGGTATGCCATACCGATATCTCTTGCTGGACGAGATTTGATGGCTTGTGCTCAGACAGGATCAGGAAAAACTGCTGCCTTCTGCTTTCCTATTATAAGTGGAATAATGAGGGAGACATATGTTCAAAGACCCCGCGTAGCACGGACTGCTTACCCGCTGGCACTTATCCTCTCCCCTACTCGGGAGCTTTCGTGCCAGATACATGACGAGGCCAAAAAATTTTCTTACCAGACTGGTGTCAAGGTGGTAGTTGCTTATGGAGGAGCACCAATCAACCAACAGCTGCGAGAGCTTGAGAGAGGAGTTGATATTCTGGTTGCAACTCCAGGGCGATTGGTAGATTTACTTGAGAGGGCCAGGACACTGCTCTTCAGTGCGACATTTCCAAAAGAGATACAGCGGCTTGCATCAGATTTTCTTTCAAGCTATGTGTTTCTAGCTGTTGGAAGGGTTGGTTCAAGTACCGACTTAATTGCTCAGAGAGTAGAATATGTGCTTGAGTCAGACAAGAGAAGCCACCTCATGGACCTTCTTCATGCTCAGAGAGAAACTGGGATTGATGGCAAGCAAGGTCTGACATTAGTTTTTGTGGAAACAAAGAAAGGAGCTGATGCACTTGAACACTGCTTGTGTGTCAATGGATTTCCTGCAACTAGCATTCATGGTGACAGAACACAACAAGAAAGAGAACTAGCACTTAGATCATTCAAGAGCGGAAACACACCTATTTTAGTGGCTACGGATGTTGCAGCTCGTGGTCTTGATATTCCAAGGGTGGCACATGTGGTGAACTTTGATCTTCCCAATGACATCGATGATTATGTTCACCGGATAGGAAGAACCGGTCGAGCTGGTAAAATGGGGTTGGCAACTGCCTTCTTCAATGAGAGTAATTTGTCCCTGGCTAAACCATTGGCTGATCTGATGCAAGAGGCGAATCAAGAAGTACCTGCCTGGCTCACACGTTATGCAGCAAAGGCTTCTTACGGCGGTGGCAACAGAAACAGGCGGGCAGGTGGATCCCGTTTCGGCGGCCGCGATTTCAGGAGGGAGGGCTCCTTCAACAAAGGAGCAGATTACTATGGAGGAGGAACCGGCGGGCATGGGGTTCCTGGCAGCTATGGTGGAGGATACAGTCAGGGCGTGACAAGTGCTTGGGATTAA 1695 0.4891 MRTSWADSADNSATRSSNSHGQSNRAAYVPPHLRNRQSEPPVPSNSAAAMPANDRSNYGGPTASYGGSSFNKPDLGRQGYGSGFQTGGGAWNSNRGGGGRDRGRREVNPFENDDASDQSFGEAENTGINFDAYDDIPVETSGENVPPPVNTFAEIDLGDTLNQNIKRCKYVKPTPVQRYAIPISLAGRDLMACAQTGSGKTAAFCFPIISGIMRETYVQRPRVARTAYPLALILSPTRELSCQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARTLLFSATFPKEIQRLASDFLSSYVFLAVGRVGSSTDLIAQRVEYVLESDKRSHLMDLLHAQRETGIDGKQGLTLVFVETKKGADALEHCLCVNGFPATSIHGDRTQQERELALRSFKSGNTPILVATDVAARGLDIPRVAHVVNFDLPNDIDDYVHRIGRTGRAGKMGLATAFFNESNLSLAKPLADLMQEANQEVPAWLTRYAAKASYGGGNRNRRAGGSRFGGRDFRREGSFNKGADYYGGGTGGHGVPGSYGGGYSQGVTSAWD 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151759g00003 564 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 297 501 - -
Stsc151759g00003 564 Gene3D - 297 336 IPR027417 -
Stsc151759g00003 564 SMART helicmild6 381 462 IPR001650 -
Stsc151759g00003 564 Pfam Helicase conserved C-terminal domain 348 462 IPR001650 -
Stsc151759g00003 564 CDD SF2_C_DEAD 335 471 - -
Stsc151759g00003 564 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 181 323 IPR014001 -
Stsc151759g00003 564 FunFam ATP-dependent RNA helicase RhlB 325 505 - -
Stsc151759g00003 564 Pfam DEAD/DEAH box helicase 174 297 IPR011545 GO:0003676|GO:0005524
Stsc151759g00003 564 MobiDBLite consensus disorder prediction 98 112 - -
Stsc151759g00003 564 SMART ultradead3 169 338 IPR014001 -
Stsc151759g00003 564 MobiDBLite consensus disorder prediction 1 122 - -
Stsc151759g00003 564 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 152 263 IPR027417 -
Stsc151759g00003 564 Gene3D - 105 296 IPR027417 -
Stsc151759g00003 564 MobiDBLite consensus disorder prediction 38 71 - -
Stsc151759g00003 564 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 350 501 IPR001650 -
Stsc151759g00003 564 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 230 477 IPR027417 -
Stsc151759g00003 564 MobiDBLite consensus disorder prediction 1 25 - -
Stsc151759g00003 564 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 150 178 IPR014014 GO:0003724
Stsc151759g00003 564 Gene3D - 337 502 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151759g00003 Stsc-Chr151759 5616 8529 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151759g00003 148 494 Eukaryotic Initiation Factors Gene Family AT3G19760 27.320 2.16e-46 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151759g00003 K11594 - gmx:100818326 860.136