LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc151758g00003	ATGGGTCGTGTTAAACTTGAGATAAAGAGAATAGATAACACGACGAATCGACAAGTTACATTCTCTAAGCGTAGAAATGGCCTCATTAAGAAGGCTTATGAGTTGTCCATCTTATGTGACATTGATATTGCTCTTATAATGTTCTCTCCATCTGGTCGTGTTAGCCACTTTTCTGGTAGAAAAAGGATTGAGGATGTTTTTACTCATTTCATTAATCTTCCAGACCAAGAAAGAGATAACGCTGTAAATTTTCCTGAACCACCCTATCGCAGGCCTATACAAAATAAGGAGTATTTACTAAGGACCCTTCAACAACTAAGAAGTGAAAATGACATAGCCCTTCAGTTGGCCAATCCGGGAGACATTAATTCGGAAATTGAGGAACTTCAACAAGAAGTTAATAGGTTACAACAACAACTTCAATTAACTGAGGAGCAGATAAGGGTATATGAACCTGACCCATTAAAGATGACATCTATTGCGGAAATTGAAGCCAGTGAGAAGCACCTAATGGACACCATGACACGTGTCATGCAAAAAAAGGAATATCTATTGAGCAATCATCTTTCTTCTTATGATCCATCCGGTATTCAGGGTGTGCCTACATCTTTCGACAATGTAGGTTGGTTACAGGATGGTGGTGGTCAAAATCATGCCCAAATTTTTGATGCATCAGCCCCTCTAGATAATCATCTCAGGGATTTGTCATCGACCCTGTATGGTTCATTTTCACAAGGGACGAGTTCTAGCGTTGTTGTTGATCCACCAGGGATGACAGAGTGCCACGTGGCAAACCCTAGTGATGGAAGCATGTCGACGTGGCCTCAAGGATACACATTGTATCCGCAAATTCAACATGACATGGTTGGTCACGACATGCCTGATATCATGTCCCACTCTCATCCCCAAGTAAACATGCCAATCACTGCTTCTTCAAATGTGGAACCACCCAAGAATAATAATAATAATACTAATAATAATGAATCTGCAGAATATGATTACAAAGTTCAGCATCAGCCTAGTCCTCAATCACAAGTTAATATTCAAATTGATTCGGAGAGTTGCATGCGAGCCTCAAATTAA	1083	0.4017	MGRVKLEIKRIDNTTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRVSHFSGRKRIEDVFTHFINLPDQERDNAVNFPEPPYRRPIQNKEYLLRTLQQLRSENDIALQLANPGDINSEIEELQQEVNRLQQQLQLTEEQIRVYEPDPLKMTSIAEIEASEKHLMDTMTRVMQKKEYLLSNHLSSYDPSGIQGVPTSFDNVGWLQDGGGQNHAQIFDASAPLDNHLRDLSSTLYGSFSQGTSSSVVVDPPGMTECHVANPSDGSMSTWPQGYTLYPQIQHDMVGHDMPDIMSHSHPQVNMPITASSNVEPPKNNNNNTNNNESAEYDYKVQHQPSPQSQVNIQIDSESCMRASN	360

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc151758g00003	360	MobiDBLite	consensus disorder prediction	302	345	-	-
	Stsc151758g00003	360	ProSiteProfiles	MADS-box domain profile.	1	61	IPR002100	GO:0003677\|GO:0046983
	Stsc151758g00003	360	MobiDBLite	consensus disorder prediction	299	345	-	-
	Stsc151758g00003	360	ProSitePatterns	MADS-box domain signature.	3	57	IPR002100	GO:0003677\|GO:0046983
	Stsc151758g00003	360	FunFam	MADS-box transcription factor 41	13	91	-	-
	Stsc151758g00003	360	PANTHER	SERUM RESPONSE FACTOR HOMOLOG	3	301	-	-
	Stsc151758g00003	360	SMART	madsneu2	1	60	IPR002100	GO:0003677\|GO:0046983
	Stsc151758g00003	360	SUPERFAMILY	SRF-like	2	79	IPR036879	GO:0003677\|GO:0046983
	Stsc151758g00003	360	Coils	Coil	119	146	-	-
	Stsc151758g00003	360	CDD	MADS_MEF2_like	2	75	IPR033896	GO:0000977\|GO:0045944
	Stsc151758g00003	360	Gene3D	-	13	86	IPR036879	GO:0003677\|GO:0046983
	Stsc151758g00003	360	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	10	57	IPR002100	GO:0003677\|GO:0046983
	Stsc151758g00003	360	PRINTS	MADS domain signature	23	38	IPR002100	GO:0003677\|GO:0046983
	Stsc151758g00003	360	PRINTS	MADS domain signature	3	23	IPR002100	GO:0003677\|GO:0046983
	Stsc151758g00003	360	PRINTS	MADS domain signature	38	59	IPR002100	GO:0003677\|GO:0046983

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc151758g00003	Stsc-Chr151758	19878	25427	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc151758g00003	1	336	Type I MADS-box Gene Family	AT1G22130	54.913	4.71e-113	330

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-M-type	Stsc151758g00003		SRF-TF	8.1e-25	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc151758g00003	-		-	pvu:PHAVU_008G170400g	504.982