Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151756g00002 ATGAGTAAGTGGTCCTTTGACCACACCCATTTGAAGATGGCTTGGATACACCACCTCCAAATCAACCAAAAAAACGGTTACATAACAAACCCACCTCCTCTTTTGCCTTCACCATCTTCAGCATCACCATATTCTGGAACCTTCCAGAAAGAACCACTCTCATATTCGTCTTCAACAACACCCCCACCTTCATCATCCGGGGCTAAAATCAGCCCTGCTGTGCTCTTCATCATTGTGATTCTCGCTGTTCTTTTCTTCATTTCCGGTCTCCTGCACCTGCTTGTTAGGTTTCTTGTTAAAAGCCCTTCATCTTCTTCCTCCGCATCTGCTCAACCTAACAGGCACCATGAAGGTTCTCTCTCTGATTCACTTCAGAGGCAGCTTCAGCAGCTTTTCCATCTCCATGACTCTGGTCTCGACCAGGCTTTCATTGATTCTCTGCCTGTTTTCCAGTACCGCGAGATCAAGGGGCCGAAGGAGCCTTTCGACTGCGCCGTCTGCCTCTGCGAGTTTTCCGACAAGGATAAGCTCAGGTTGCTCCCTGTGTGCAGCCATGCCTTCCACATCAGCTGTATAGACACGTGGCTTCTTTCGAATTCCACTTNNNNNNNNNNACTCTTCGCGCCGGGGTTTTCGATCGAGAATCCGGTGTTTGATTTCAATGATTTGAGGGAAGATGAGGGCTACCCCTGCCCTTGTAGTAACAATAACAATGGAGGTATTGCTATCAGTGGCTTTGCTAATAGACAGAAGAAGGTTGAGATTGAAGAAACTGCGGACAAGGGGATTCTTCCTGTGAGACTTGGTAAATTTAGGAGGGTGGATTTGGGCGCCGCGGAGCCTGATATCGAAGGAGGAGAGGCTAGTAGTAGTAATTTGGATGCTAGAAGATGTTACTCAATGGGGTCTTATCAATATGTACTCGGAAATTCGGACCTCCGGATAGCCTTGAATAGTGGTAATCACCGGCAGGTTCGCGACACAGAGGATCTTAATGGAGGAATGGAAGAGAATTCCGAGAAGATATCGGTTGAGGTGGAGAGGGAAGGGAAGAACATTACTAGTGTTAGCAGGGGAGAGAGCTATTCTGTTTCCAAAATATGGTTGTGGTCAAAGAAGGGCAAATTTTCAGTTTCTTCAGATGCACACAACATTGGACTACCATCTTCTCTTAATTCCGATTTGCCTTGGATGAGAGAAATTGAAGGTACATGA 1215 0.4634 MSKWSFDHTHLKMAWIHHLQINQKNGYITNPPPLLPSPSSASPYSGTFQKEPLSYSSSTTPPPSSSGAKISPAVLFIIVILAVLFFISGLLHLLVRFLVKSPSSSSSASAQPNRHHEGSLSDSLQRQLQQLFHLHDSGLDQAFIDSLPVFQYREIKGPKEPFDCAVCLCEFSDKDKLRLLPVCSHAFHISCIDTWLLSNSTXXXXLFAPGFSIENPVFDFNDLREDEGYPCPCSNNNNGGIAISGFANRQKKVEIEETADKGILPVRLGKFRRVDLGAAEPDIEGGEASSSNLDARRCYSMGSYQYVLGNSDLRIALNSGNHRQVRDTEDLNGGMEENSEKISVEVEREGKNITSVSRGESYSVSKIWLWSKKGKFSVSSDAHNIGLPSSLNSDLPWMREIEGT 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151756g00002 404 ProSiteProfiles Zinc finger RING-type profile. 164 232 IPR001841 -
Stsc151756g00002 404 SUPERFAMILY RING/U-box 143 201 - -
Stsc151756g00002 404 MobiDBLite consensus disorder prediction 40 62 - -
Stsc151756g00002 404 Pfam RING-like zinc finger 163 192 IPR001841 -
Stsc151756g00002 404 CDD RING-H2_EL5-like 163 201 - -
Stsc151756g00002 404 SMART ring_2 164 234 IPR001841 -
Stsc151756g00002 404 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 139 237 IPR013083 -
Stsc151756g00002 404 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 65 368 - -
Stsc151756g00002 404 MobiDBLite consensus disorder prediction 29 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151756g00002 Stsc-Chr151756 5266 7274 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151756g00002 64 375 C3H Transcription Factor Family AT2G18650 40.407 2.20e-48 168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151756g00002 - - qsa:O6P43_004596 459.144