Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151755g00001 ATGATGAGATCATCTCCACCATCATCATCAACAGTTTCACACCCTTCTCCTTATTCAATGGGAGTTCTCCACTCAGACATGGGCTCTCTCTCTCTTTCCATGCTTTCTTCATCTCAAGAGAGTAGTACTTATTATTATGCCATGGAAATGCAAAACCATATCCAAGAATGCCCCCATAATGATAAAGATTCTGATTATGAAGAAGGAGAAGAAGCAGCAGCAGCTAATAATGAGGAGAATTATTGTGTGATGAGTAGTGGCAAAGTGGTAAATAACAGTGAAAGGAACAAAGTGTGTGCAAGAGGGCATTGGAGGCCTGCAGAAGATTCCAAGCTGAAGGAGCTTGTGGCTCTTCATGGCCCTCAGAACTGGAGCCTCATTGCTCAACATCTAGAAGGAAGATCAGGGAAGAGTTGTAGGTTGAGATGGTTCAACCAATTAGATCCAAGAATAAAGAAGAATCCATTGAGTGAAGAGGAAGAAGAGAGACTAATGGAGGCACATAGAGTTTATGGCAACAAATGGGCCATGCTTGCAAGGCTTTTTCCTGGCAGAACAGATAATGCTATCAAGAACCACTGGCATGTTATCATGGCTAGAAACTGTAGGCAACACAAGAAGAAATCCATTGCTTCAAGGACAAACAAAAACCATAATACCCTTCTCTTCAGTAGTAGAAATAATAATAATAAGTCAAATAACACCACCACCAACATTACTACTACTACTAGTACTCACATGGCTGCTGCTGCTACTTGTTGGAGACAACAACATGGTAATAATAATAATGAAGAAGAGGACTCTTACGGCTTCTATAATCAACAACAGTTTCCTTTTGATTATTATTTCTTCTCTGGTGTTACTAGCAATTATGACAGATGTAATAGGGACAGAACTACTACTGGTGATGATGAATGTCATGATCTTCATCATATTATTCATCCCCAAGAATATGTCTATCAAATGCAACAAATGCAAAAAAACCACAACTTGAACAGTTACTCATCATCATCTGGCTCCTCTTCAACATCTACCACAACACCCCATGTTTCTTTGGCCATGGAACTATCATCTTCATCAACAACAACAACACCATCCTTTGCTCAAAACAGGAATATGGTCCCTCGTAGGGACCCCCCAGATACATCTTCTAATTTTACACCACCATTAATTGACTTCCTCGGAGTAGGATCCACATGA 1200 0.4008 MMRSSPPSSSTVSHPSPYSMGVLHSDMGSLSLSMLSSSQESSTYYYAMEMQNHIQECPHNDKDSDYEEGEEAAAANNEENYCVMSSGKVVNNSERNKVCARGHWRPAEDSKLKELVALHGPQNWSLIAQHLEGRSGKSCRLRWFNQLDPRIKKNPLSEEEEERLMEAHRVYGNKWAMLARLFPGRTDNAIKNHWHVIMARNCRQHKKKSIASRTNKNHNTLLFSSRNNNNKSNNTTTNITTTTSTHMAAAATCWRQQHGNNNNEEEDSYGFYNQQQFPFDYYFFSGVTSNYDRCNRDRTTTGDDECHDLHHIIHPQEYVYQMQQMQKNHNLNSYSSSSGSSSTSTTTPHVSLAMELSSSSTTTTPSFAQNRNMVPRRDPPDTSSNFTPPLIDFLGVGST 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151755g00001 399 ProSiteProfiles Myb-like domain profile. 148 198 IPR001005 -
Stsc151755g00001 399 SUPERFAMILY Homeodomain-like 101 194 IPR009057 -
Stsc151755g00001 399 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 152 202 IPR017930 -
Stsc151755g00001 399 PANTHER MYB PROTEIN-RELATED 101 238 - -
Stsc151755g00001 399 CDD SANT 104 145 IPR001005 -
Stsc151755g00001 399 Gene3D - 155 235 - -
Stsc151755g00001 399 MobiDBLite consensus disorder prediction 330 399 - -
Stsc151755g00001 399 MobiDBLite consensus disorder prediction 330 389 - -
Stsc151755g00001 399 Pfam Myb-like DNA-binding domain 155 196 IPR001005 -
Stsc151755g00001 399 Pfam Myb-like DNA-binding domain 101 147 IPR001005 -
Stsc151755g00001 399 CDD SANT 164 195 IPR001005 -
Stsc151755g00001 399 ProSiteProfiles Myb-like domain profile. 101 147 IPR001005 -
Stsc151755g00001 399 SMART sant 152 200 IPR001005 -
Stsc151755g00001 399 SMART sant 100 149 IPR001005 -
Stsc151755g00001 399 FunFam MYB transcription factor 101 152 - -
Stsc151755g00001 399 Gene3D - 101 152 - -
Stsc151755g00001 399 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 96 151 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151755g00001 Stsc-Chr151755 3075 5348 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151755g00001 58 208 MYB Transcription Factor Family AT5G17800 61.589 6.09e-62 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc151755g00001 Myb_DNA-binding 4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151755g00001 K09422 - gmx:100776292 233.032