Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151754g00002 ATGGAGTTTTCGTTTCTTCTAATTTTCCAGTTCTTGCTTCTTGGTCCAGCTTTAATATCTTCTTCTCCAGTTCAAGATCCTGAATCCGTTGTGCATGAACTACACAAGATCACTAATGATTCAAGGAGAAATTTGGCTTACTTTTCTTGCGGCACAGGCAACCCCATTGACGATTGCTGGAGGTGTGACCCGAATTGGGAAAGCAACCGGAAGCGCCTCGCCGACTGCGTAGTGGGCTTCGGGAGGCGCACCATTGGAGGTAGGGATGGAAAATATTATGTGGTCACTGACCCTAGTGACCACCCTATGAACCCTAGGCCAGGGACTCTAAGACATGGACATAGTGATTCCAATGAAGAAGAGGACAAGAATATGCAAGTTACTGTGGCATTCAACCATTTTGGAGAAGGGCTTGGAGGAAGAATGCCAAGATGCAGGTTTGGGTACTTTCATGTGGTGAATAATGATTATACCCATTGGCAGCAATATGCAATAGGAGGAAGTTCCTCCCCAACTATTTTTAGCCAAGGCAACAGATTTCTTGCTCCTCCAGATGTTGATCACAAAGAGGTTACTAAACACTTTGGTTCATCAAAAAAGGAGTGGAAGAGGTGGAATTGGAGATCTGAAGGGGATTTAATGTTGAATGGTGCCTTCTTCACAGAATCTGGAGATGGAGAAGCTTTTTTGTATGAGAAGGCATCAAGCATGGAAGGAAGACCAGCTAAGTTTGTGACTTCAATAACAGCTGGAGCTGGAGCACTTGCTTGCAAAAAGGGCCAACTTTGCTAG 792 0.4482 MEFSFLLIFQFLLLGPALISSSPVQDPESVVHELHKITNDSRRNLAYFSCGTGNPIDDCWRCDPNWESNRKRLADCVVGFGRRTIGGRDGKYYVVTDPSDHPMNPRPGTLRHGHSDSNEEEDKNMQVTVAFNHFGEGLGGRMPRCRFGYFHVVNNDYTHWQQYAIGGSSSPTIFSQGNRFLAPPDVDHKEVTKHFGSSKKEWKRWNWRSEGDLMLNGAFFTESGDGEAFLYEKASSMEGRPAKFVTSITAGAGALACKKGQLC 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151754g00002 263 Gene3D - 53 112 IPR012334 -
Stsc151754g00002 263 Gene3D - 113 256 IPR012334 -
Stsc151754g00002 263 SMART amb_all 20 186 IPR002022 -
Stsc151754g00002 263 Pfam Pectate lyase 112 180 IPR002022 -
Stsc151754g00002 263 PRINTS Pollen allergen Amb family signature 99 124 IPR018082 -
Stsc151754g00002 263 PRINTS Pollen allergen Amb family signature 76 93 IPR018082 -
Stsc151754g00002 263 MobiDBLite consensus disorder prediction 97 121 - -
Stsc151754g00002 263 SUPERFAMILY Pectin lyase-like 54 117 IPR011050 -
Stsc151754g00002 263 SUPERFAMILY Pectin lyase-like 111 261 IPR011050 -
Stsc151754g00002 263 PANTHER PECTATE LYASE 18-RELATED 113 261 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151754g00002 Stsc-Chr151754 14917 17774 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151754g00002 113 263 Polysaccharide Lyase AT4G13710 64.238 1.38e-63 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151754g00002 K01728 - gmx:100801136 253.832