Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151751g00002 ATGGGTGGAGAGAACGGTGTAGATGGGAAAGAGCAGAGTAAGAATAATAAAAGTGATGAGGAGGCAAACACATCAGGGAATCAAGGAGAAGGAAAAAGCGTCAAGGGTGAAAAGGATGAGAAGAAGAACAAGAAAAATGAGAAGTCCGAAACGGTGCCGTTTTACAAGCTGTTCCACTTTGCAGATTCCTTAGACATTATTTTGATGGTAACTGGAACAGTTGGTGCCATTGGAAACGGTATGGGTTTGCCTCTCATGACGCTTCTCTTTGGTCAAATGATTGATACCTTCGGTTCCAACCAGAAAAACCAAGACGTAGTGCAACAAGTTTCCAAGGTTGCATTAAAATTTGTGTACTTGGCAATTGGAAGTGGGGTGGCAGCGTTCCTCCAGGTTAGTTGCTGGATGGTCACAGGAGAGAGACAAGCAGCAAGAATCAGGGGATTGTATTTGAAAACTATATTGAGACAAGATGTTGCTTTCTTTGATAAAGAAACAAACACAGGTGAGGTTGTTGGCAGGATGTCCGGTGACACAGTTCTCATTCAAGATGCCATGGGTGAGAAGGTTGGAAAGTTTATTCAGCTAGTAGCAACATTTATTGGTGGATATATGATTGCGTTTATCAAAGGGTGGCTTCTTACTATGGCTACCAGAGGTCAAACTGCATATGCAAAAGCTGCACATGTTGTTGAACAAACTATTGGCTCAATAAGAACTGTTGCATCCTTTACAGGGGAAAAGCAAGCAGTATCTGATTATAAAAAGCATCTTGTGGAAGCCTACAACTCAGGAATACATGAAGGTGCCATGGAAGGGATAGGTATGGGCACAATGATGCTTTTTATCTTCTGTGGCTATGCTATGGCTGTATGGTTTGGCGCAAAGATGGTAATGGAAAAGGGATATAATGGCGGCACGGTGGTTAATGTCATTGTTGCTGTCTTAACAGCTTCCATGTCTCTTGGTCAGGCATCTCCTAGCATGAGCGCTTTCGCCGCAGGTCAGGCTGCGGCATACAAAATGTTCGAGACAATAGAGAGGAAGCCGGAGATAGATGCTTATGATCCGAATGGAAAAACATTGGAGGATATCCAGGGTGACATTATGTTAAAGGATGTTTGTTTCAGTTATCCATCAAGACCTGAGGAATTGATATTCAGTGGACTCTCCCTGCATATACCGAGTGGCACCACCGCGGCTTTAGTCGGAGAAAGTGGAAGTGGGAAGTCCACAGTCATCAGTTTGATAGAAAGATTCTATGATCCACAAGCTGGTGAAGTCCTCATTGATGGCATTAACTTGAAAGAGTTTCAGCTTAGGTGGATCAGAGGAAAAATTGGCCTTGTTAGCCAGGAACCGGTTCTGTTTGCTTCTAGCATTAGGGACAACATTGCATATGGAAAGGAAGGAGCAACAATTGAAGAGATCAAATCCGCCTCTGAGCTAGCAAATGCTGCCAAGTTCATCGATAAATTGCCACAGGGATTGGACACAATGGTTGGTGAGCATGGTCTTCAGTTGTCTGGGGGACAGAAGCAGCGCATTGCGATTGCAAGAGCAATCCTGAAAGATCCGAGGATCCTGCTTCTAGACGAAGCCACGAGTGCACTCGATGCAGAGTCTGAAAGGGTAGTGCAAGAGGCTCTAGACAGGATCATGGGCAACAGAACTACTGTTGTCGTGGCGCATCGCCTGAGCACAGTGAGGAATGCTGATATGATTGCTGTGATTCATAGAGGGAAGATGGTTGAGCAAGGAACACACTCAGAATTACTCAAGGATCCTGAGGGAGCTTACTCTCAGCTTATACGTTTGCAAGAAGTAAACAAGGAATCAAAAGAAAATGCAGATCATCAAAGCAAGAATGAACTTTCATCAGAGTCTTTTAGACAATCCAGTCAAAGGAAATCACTCCAAAGATCTATCAGCAGGGGATCATCAATTGGGAACAGCAGCCGCCACTCCTTTAATGTTTCATTCGGTTTGCCTACCGGAGTTAATGTCTCCGATCCTGAGCATGAAACCTTAGAAGCTAAGGAAAAAGCGCCGGAGGTTCCACTAATGCGCCTCGCCACCCTCAACAAGCCGGAGATTCCAGTTCTTATCGTTGGATCTTTAGCAGCCATAGGAAATGGAGTCATATTTCCAATATTCGGACTCTTCCTTTCCAGTGTCATCAAAACATTCTATGAGCCATTTCATGAGATGAGAAAGGACTCCAGGTTTTGGGCACTAATGTTTGTGATACTTGGCCTTGCATCATTTATGGTGATTCCAGTCCGGGCATACTTCTTTTCTGTGGCTGGATCAAAGTTAATTCGACGTATAAGGCTATTATGTTTCCAGAAGGTTGTCAACATGGAAGTTGGTTGGTTTGATGAGCCAGAGAACTCGAGTGGCGCAGTTGGCGCGAGGCTCTCGGCCGATGCTGCATCGGTTCGCGCCCTTGTTGGCGATGCACTTGGCCTCTTAGTTAATAACATAGCATGCGCTTTGGCTGGTTTAATCATTGCCTTTGTTGCAAGCTGGCAGTTGTCATTGATAGTTCTTGTCTTGATTCCCCTGATTGGTATAAATGGTTATATTTCAGTGAAATTCATGAAAGGATTTAGTGCAGATGCAAAGATGATGTATGAGGAAGCAAGCCAAGTTGCAAATGATGCAGTTGGAAGCATAAGAACAGTTGCCTCATTCTGTGCTGAAGACAAGGTTTTGGAACTATATAGGAAGAAATGTGAAGGCCCTATGAAAACTGGGATCAGACAAGGAGTGATTAGTGGATCAGGATTTGGCATTTCATTTTTCTTGCTGTTTTGTGTCTATGCAACAAGTTTCTATGCCGGAGCTAGGTTTGTGAAAGCTGGGATGGCCACATTCTCAGACGTTTTCCGGGTTTTCTTTGCTTTAACTATGGCTGCTACTGGAGTATCCCAATCAAGTTCCTTTGCCCCTGACTCAAGCAAAGCCAAGATAGCTGCTGCTTCCATATTTGGAATAATTGATAGGAAATCAAAGATAGATCCTAGTGATGAGTCTGGTAGAACCTTGGATACTGTCAAGGGCGATATCGAGATTCGCCATTTAAGCTTCAGGTATCCATCTCGGCCGGATGTACAAATTTTACGGGATCTCAACCTGGCCATCAATTCTGGCAAGACAGTAGCACTTGTTGGTGAAAGTGGAAGTGGGAAATCAACAGTGATATCGTTGTTACAGAGATTTTATGAGCCAGAGTCAGGTGAAATCACACTAGATGGTGTGGAAATAAGGCAGTTACAGCTAAAGTGGTTAAGGCAACAAATGGGACTTGTAAGCCAAGAACCAGTGTTGTTCAATGAATCCATCCGTGCAAATATAGCTTATGGAAAAGGTGGGGATGCAACTGAATCAGAAATCATATCTGCAGCAGAATTGGCCAATGCTCATAGGTTCATCAGTGCCTTGCATCAGGGATACGACACTATAGTGGGAGAGAGGGGAACCCAATTATCTGGTGGCCAAAAACAACGTGTGGCAATAGCACGTGCCATAATCAAAAGTCCAAAGATATTGCTATTAGATGAAGCAACAAGTGCATTAGATGCAGAGTCAGAAAGAGTTGTTCAAGATGCATTAGACAGAGTCGTGGTCAACAGGACCACCGTGGTCGTCGCACACCGCTTGTCCACAATAAAAAACGCTGATGTTATTGCTGTGGTGAAAAATGGAGTTATAGTAGAGAAAGGAAGACATGAAACATTGATTAATATTAAGGATGGCTTTTATGCTTCTTTGGTTCAACTTCACACTAGTGCTTCAACAGCCTGA 3810 0.4386 MGGENGVDGKEQSKNNKSDEEANTSGNQGEGKSVKGEKDEKKNKKNEKSETVPFYKLFHFADSLDIILMVTGTVGAIGNGMGLPLMTLLFGQMIDTFGSNQKNQDVVQQVSKVALKFVYLAIGSGVAAFLQVSCWMVTGERQAARIRGLYLKTILRQDVAFFDKETNTGEVVGRMSGDTVLIQDAMGEKVGKFIQLVATFIGGYMIAFIKGWLLTMATRGQTAYAKAAHVVEQTIGSIRTVASFTGEKQAVSDYKKHLVEAYNSGIHEGAMEGIGMGTMMLFIFCGYAMAVWFGAKMVMEKGYNGGTVVNVIVAVLTASMSLGQASPSMSAFAAGQAAAYKMFETIERKPEIDAYDPNGKTLEDIQGDIMLKDVCFSYPSRPEELIFSGLSLHIPSGTTAALVGESGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLRWIRGKIGLVSQEPVLFASSIRDNIAYGKEGATIEEIKSASELANAAKFIDKLPQGLDTMVGEHGLQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDRIMGNRTTVVVAHRLSTVRNADMIAVIHRGKMVEQGTHSELLKDPEGAYSQLIRLQEVNKESKENADHQSKNELSSESFRQSSQRKSLQRSISRGSSIGNSSRHSFNVSFGLPTGVNVSDPEHETLEAKEKAPEVPLMRLATLNKPEIPVLIVGSLAAIGNGVIFPIFGLFLSSVIKTFYEPFHEMRKDSRFWALMFVILGLASFMVIPVRAYFFSVAGSKLIRRIRLLCFQKVVNMEVGWFDEPENSSGAVGARLSADAASVRALVGDALGLLVNNIACALAGLIIAFVASWQLSLIVLVLIPLIGINGYISVKFMKGFSADAKMMYEEASQVANDAVGSIRTVASFCAEDKVLELYRKKCEGPMKTGIRQGVISGSGFGISFFLLFCVYATSFYAGARFVKAGMATFSDVFRVFFALTMAATGVSQSSSFAPDSSKAKIAAASIFGIIDRKSKIDPSDESGRTLDTVKGDIEIRHLSFRYPSRPDVQILRDLNLAINSGKTVALVGESGSGKSTVISLLQRFYEPESGEITLDGVEIRQLQLKWLRQQMGLVSQEPVLFNESIRANIAYGKGGDATESEIISAAELANAHRFISALHQGYDTIVGERGTQLSGGQKQRVAIARAIIKSPKILLLDEATSALDAESERVVQDALDRVVVNRTTVVVAHRLSTIKNADVIAVVKNGVIVEKGRHETLINIKDGFYASLVQLHTSASTA 1269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151751g00002 1269 Gene3D - 367 624 IPR027417 -
Stsc151751g00002 1269 CDD ABC_MTABC3_MDL1_MDL2 369 607 - -
Stsc151751g00002 1269 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1014 1262 IPR027417 -
Stsc151751g00002 1269 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1024 1261 IPR003439 GO:0005524
Stsc151751g00002 1269 PANTHER ABC TRANSPORTER B FAMILY 33 609 IPR039421 -
Stsc151751g00002 1269 MobiDBLite consensus disorder prediction 611 625 - -
Stsc151751g00002 1269 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 703 989 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc151751g00002 1269 Gene3D - 1014 1268 IPR027417 -
Stsc151751g00002 1269 FunFam ABC transporter B family member 1 682 990 - -
Stsc151751g00002 1269 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 369 605 IPR003439 GO:0005524
Stsc151751g00002 1269 MobiDBLite consensus disorder prediction 626 652 - -
Stsc151751g00002 1269 Gene3D ABC transporter type 1, transmembrane domain 65 217 IPR036640 GO:0005524|GO:0016020
Stsc151751g00002 1269 CDD ABC_MTABC3_MDL1_MDL2 1024 1262 - -
Stsc151751g00002 1269 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 70 334 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc151751g00002 1269 MobiDBLite consensus disorder prediction 32 46 - -
Stsc151751g00002 1269 FunFam ABC transporter B family member 1 359 608 - -
Stsc151751g00002 1269 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 358 607 IPR027417 -
Stsc151751g00002 1269 ProSitePatterns ABC transporters family signature. 508 522 IPR017871 GO:0005524|GO:0016887
Stsc151751g00002 1269 Pfam ABC transporter 389 536 IPR003439 GO:0005524
Stsc151751g00002 1269 FunFam ABC transporter B family member 9 991 1013 - -
Stsc151751g00002 1269 SUPERFAMILY ABC transporter transmembrane region 56 353 IPR036640 GO:0005524|GO:0016020
Stsc151751g00002 1269 SMART AAA_5 1051 1244 IPR003593 GO:0016887
Stsc151751g00002 1269 SMART AAA_5 396 582 IPR003593 GO:0016887
Stsc151751g00002 1269 CDD ABC_6TM_Pgp_ABCB1_D2_like 694 1007 - -
Stsc151751g00002 1269 Pfam ABC transporter transmembrane region 703 973 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc151751g00002 1269 Pfam ABC transporter transmembrane region 221 320 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc151751g00002 1269 Pfam ABC transporter transmembrane region 71 218 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc151751g00002 1269 CDD ABC_6TM_Pgp_ABCB1_D1_like 69 330 - -
Stsc151751g00002 1269 MobiDBLite consensus disorder prediction 1 46 - -
Stsc151751g00002 1269 Pfam ABC transporter 1042 1192 IPR003439 GO:0005524
Stsc151751g00002 1269 Gene3D ABC transporter type 1, transmembrane domain 218 998 IPR036640 GO:0005524|GO:0016020
Stsc151751g00002 1269 MobiDBLite consensus disorder prediction 611 652 - -
Stsc151751g00002 1269 ProSitePatterns ABC transporters family signature. 1164 1178 IPR017871 GO:0005524|GO:0016887
Stsc151751g00002 1269 SUPERFAMILY ABC transporter transmembrane region 690 1008 IPR036640 GO:0005524|GO:0016020
Stsc151751g00002 1269 FunFam ABC transporter B family member 1 1014 1264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151751g00002 Stsc-Chr151751 6984 14025 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151751g00002 52 1263 Calmodulin-binding Proteins AT2G36910 44.240 0.0 1037
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151751g00002 K05658 - gmx:100800034 2037.31