Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151750g00008 ATGTACTGTTGTGTTATCATTAGCATCATCCTGTACTCTCTGTTGAGCAGAACCAGTTTGTGCAGTTATGTGGATCCACACTTCCTGGCATGTGAACCCCAAACATGCCGCAACCAATCCATAAGATACCCCTTCTACATCCAAGGCAAACAGGAACCTTTCTGTGGCTACCCTGGTTTTGCCATCTCTTGTGATACTAATAATGCCTTCCCAATTCTCAATCTCTCTAGTATTTCTTATATCATCCATCAAATATTCTACCACAATGAATCACTCAGAGTCTCCAATGCTGCCTTTTCATCAACCAACAACAACACGCCACTTTATTGTCTTTCTCTTGCACAAAACCTCACCCTTCCTCCAACCAATACCTTCAATCTTGTTGATCAGAATAATCATAAGGACATCATCTTGTTCTTCGGCTGTAACCTGTCATCCATGCCCCCAGAATTGATGGATTACAGAATCGGGTGTTCTGAAGGGAACAACAAAACGGGTGGCTCGGTTCTGGCATTGTATAAGGACGATGTAAAAACAGTAAACTTGGCGTCCAAGAGTTGCGGGACGGGGGTAGAGGTGGTGGATGCGGTGGTGGAAGAGGAAAAGAGCAGTGGAGGAGGAGGGATAAAAGAAGCGCTGAGGAGAGGTTTCATGCTGAATTGGACTGCGAGTGATTGCAAGCTGTGCAGTAGCACGGGAGGAAGGTGTGGGTTCAATTCAAGTATATTCACTTTCCAGTGTTACTGCACTGATCGAATTCATGCTTCCAAATGTTATATTCCAGATGGTAGAAATAAGGCTTCCTTGAAGATGGGACTTGCACTCGGACTAGCTGCTGCAGTTACTCTGCTGTTAGTAATGGTCACCCTCTACTGCACAAGATGGAAGAAGCAAAATCAAAGACACCTTCTGGTTGATGCCTTTTTGGAAAGACATGGACACCTTCAAATCAAGAGGTACAGCTATTCTGAGATGAAGAAAGTGACCAACTCCTTCAAAAACAAACTAGGCGAAGGGGGATTTGGCAGTGTATACAAAGGACAATTAAAAGATGGGCGACACGTTGCAGTGAAGATCCTAAGTGAATTGAAAGGGCATGGTGAAGATTTTATCAATGAAGTTGTGAGTATGAGTAGAACATCTCATGTTAATGTTCTTGCTCTTCTTGGGTTCTGCTTTGAAGGTTCTAAACAAGCTTTAGTTTATGAATTTATGCCTAATGGATCCCTTGAGAAGCTCCTCTCTGAAGAAAATGACATGATAGGTGATCGCCAATTAGATTATCAAACTTTATATGATATTGCAATTGGTGTTGCTAAAGGACTAGAATATCTGCATAAGGGCTGCAATACTAGAATCTTGCATTTTGACATAAAGCCTCATAACATTCTCTTGGATGAGAATTTCTGTCCCAAAATTTCAGATTTTGGACTTGCAAAAGTTTGTACAAGAAAAGAAAGCATGGTATCGATATCTGGTACAAGAGGAACTGCAGGCTATATCGCCCCAGAGGTGTTTTCTAGGAATTTTGGTGTAATATCACATAAGTCAGATGTTTATAGTTATGGAATGATGGTTTTAGAGATGGTTGGAAGAAGAAGGAATATCAAGACTGAAGTAGATGCTTCAAGTGAAACGTATTTTCCCTATTGGGTATACAATAGACTTGTTTCAAATCAACAGCTTGGTCTGCAGAGTATAAGCAATGAATTTGATAACGAGAAGAGTATGGAGAAATCTATTACTCTGTAG 1752 0.411 MYCCVIISIILYSLLSRTSLCSYVDPHFLACEPQTCRNQSIRYPFYIQGKQEPFCGYPGFAISCDTNNAFPILNLSSISYIIHQIFYHNESLRVSNAAFSSTNNNTPLYCLSLAQNLTLPPTNTFNLVDQNNHKDIILFFGCNLSSMPPELMDYRIGCSEGNNKTGGSVLALYKDDVKTVNLASKSCGTGVEVVDAVVEEEKSSGGGGIKEALRRGFMLNWTASDCKLCSSTGGRCGFNSSIFTFQCYCTDRIHASKCYIPDGRNKASLKMGLALGLAAAVTLLLVMVTLYCTRWKKQNQRHLLVDAFLERHGHLQIKRYSYSEMKKVTNSFKNKLGEGGFGSVYKGQLKDGRHVAVKILSELKGHGEDFINEVVSMSRTSHVNVLALLGFCFEGSKQALVYEFMPNGSLEKLLSEENDMIGDRQLDYQTLYDIAIGVAKGLEYLHKGCNTRILHFDIKPHNILLDENFCPKISDFGLAKVCTRKESMVSISGTRGTAGYIAPEVFSRNFGVISHKSDVYSYGMMVLEMVGRRRNIKTEVDASSETYFPYWVYNRLVSNQQLGLQSISNEFDNEKSMEKSITL 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151750g00008 583 ProSitePatterns Serine/Threonine protein kinases active-site signature. 453 465 IPR008271 GO:0004672|GO:0006468
Stsc151750g00008 583 Pfam Wall-associated receptor kinase C-terminal 178 251 IPR032872 -
Stsc151750g00008 583 FunFam Os07g0541700 protein 405 497 - -
Stsc151750g00008 583 SMART serkin_6 330 567 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151750g00008 583 Pfam Wall-associated receptor kinase galacturonan-binding 31 95 IPR025287 GO:0030247
Stsc151750g00008 583 FunFam S-receptor-like serine/threonine-protein kinase 296 404 - -
Stsc151750g00008 583 Gene3D Phosphorylase Kinase; domain 1 307 404 - -
Stsc151750g00008 583 PANTHER RUST RESISTANCE KINASE LR10-RELATED 305 579 IPR045874 GO:0004672
Stsc151750g00008 583 SUPERFAMILY Protein kinase-like (PK-like) 314 554 IPR011009 -
Stsc151750g00008 583 ProSitePatterns Protein kinases ATP-binding region signature. 336 358 IPR017441 GO:0005524
Stsc151750g00008 583 Pfam Protein tyrosine and serine/threonine kinase 332 532 IPR001245 GO:0004672|GO:0006468
Stsc151750g00008 583 Gene3D Transferase(Phosphotransferase) domain 1 405 582 - -
Stsc151750g00008 583 ProSiteProfiles Protein kinase domain profile. 330 583 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151750g00008 Stsc-Chr151750 24914 27511 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151750g00008 10 583 Receptor kinase-like Gene Family AT5G38260 39.626 1.16e-125 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Stsc151750g00008 PK_Tyr_Ser-Thr 3.7e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151750g00008 - - ahf:112712060 968.378