Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151750g00001 ATGGATTACAGAATAGGGTGTTCTGAAGGGAACAACAAAACGGGTGGTTCGGTTCTCGCATTGTATAAGGACGATGTAGAAACAGTAAACTTGGCGTCCAAGAGTTGCGGGACGGGGGTAGAGGTGGTGGATGCGGTGGTGGAAGAGGAAAAGAGTAGTGGAGGAGGAGGAGGGATAGAAGAGGCGCTTAGGAGAGGGTTCATGCTGAATTGGACTGCCAGTGATTGCAAGTTGTGCAGTAGCACCGGAGGAAGGTGTAGGTTCAATTCAAATGGTAGAAGTAAGGCTTCCATGAAGATGGGACTTGCCCTCGGACTAGCTGCTGCAGTTACTCTGCTGTTAGTAACGGTCACCCTCTACTACACAAGAGGGAAGAAGCAAAATCAAAAACACCTTCTGGTTGATGCCTTTTTGGAAAGACATGGACACCTTCAAATCAAGAGGTACAGCTATTCTGAGATGAAGAAAGTGACCAACTCCTTTAAAAAGAAACTAGGCGAAGGGGGATTCGGTAGTGTATACAAAGGACAATTAAAGGATGGACGACATGTTGCAGTGAAGATCCTAAGTGAATTGAAAGGTGATGGTGAGGACTTCATCAATGAAGTTGCGAGTATGAGCAGAACCTCTCATGTTAACATTATTGCTCTTCTTGGCTTCTGCTTTCAAGACTTTGGACTTGCGAATGTTTGTACAAGAAAAGAAAGAACGGTATCAATATCTGGTACAAGAGGAATTGCAGGCTATATTGCACCAGAAGTCTTTTCTAGGAACTTTGGTGTAATATCACATAAGTCGGATGTTTATAGTTATGGAATGATGGTTTTAGAGATGGTTGGAAGAAGAAGGAATATCAAGACTGAAGTAGATGCTTCGAGTGAAATATATTTTCCTTATTGGATATACAATAGACTTGTTTCAAATCAAGAGCTTGGTCTGCAGAGTATAAGCAATGTATTTGATAATGAGAAGGTAAGAAAGCTGACAATGGTGAGCTTATGGTGCATTCAAACTAACCCTTCAAACCGGCCATCAATTAGTAAGGCAGTGGAAATGCTAGAAGGAAGAGTTGAATTGTTGCAATTGCCCCCTAAACCATTTTGGTATTCTCCCACAGCCTCTCCCTAA 1128 0.4255 MDYRIGCSEGNNKTGGSVLALYKDDVETVNLASKSCGTGVEVVDAVVEEEKSSGGGGGIEEALRRGFMLNWTASDCKLCSSTGGRCRFNSNGRSKASMKMGLALGLAAAVTLLLVTVTLYYTRGKKQNQKHLLVDAFLERHGHLQIKRYSYSEMKKVTNSFKKKLGEGGFGSVYKGQLKDGRHVAVKILSELKGDGEDFINEVASMSRTSHVNIIALLGFCFQDFGLANVCTRKERTVSISGTRGIAGYIAPEVFSRNFGVISHKSDVYSYGMMVLEMVGRRRNIKTEVDASSEIYFPYWIYNRLVSNQELGLQSISNVFDNEKVRKLTMVSLWCIQTNPSNRPSISKAVEMLEGRVELLQLPPKPFWYSPTASP 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151750g00001 375 SUPERFAMILY Protein kinase-like (PK-like) 146 370 IPR011009 -
Stsc151750g00001 375 PANTHER RUST RESISTANCE KINASE LR10-RELATED 223 370 IPR045874 GO:0004672
Stsc151750g00001 375 Gene3D Transferase(Phosphotransferase) domain 1 227 357 - -
Stsc151750g00001 375 ProSitePatterns Protein kinases ATP-binding region signature. 165 187 IPR017441 GO:0005524
Stsc151750g00001 375 ProSiteProfiles Protein kinase domain profile. 159 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151750g00001 375 Pfam Wall-associated receptor kinase C-terminal 28 92 IPR032872 -
Stsc151750g00001 375 Gene3D Phosphorylase Kinase; domain 1 136 226 - -
Stsc151750g00001 375 Pfam Protein tyrosine and serine/threonine kinase 161 223 IPR001245 GO:0004672|GO:0006468
Stsc151750g00001 375 Pfam Protein tyrosine and serine/threonine kinase 224 353 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151750g00001 Stsc-Chr151750 6600 8527 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151750g00001 51 366 Receptor kinase-like Gene Family AT1G66930 33.600 7.10e-57 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Stsc151750g00001 PK_Tyr_Ser-Thr 3.2e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151750g00001 - - ahf:112712060 324.709