Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151748g00001 ATGGCAGCAGAGTCTCAGAGATCCACAGGAACAGTGAAATGGTTCAACGCACAAAAAGGTTTCGGATTCATAGCTCCCGACGATGGCGGCGAGGATCTCTTCGTCCACCACTCCGCCATTCGATCCGACGGTTATCGGACACTCTCCGAGGGCCAGCCGGTTGAGTTTGCCGTTGATTACGGCGACGCCGGCAGAACCAAGGCTGTCGACGTCTCTTCCATGGCTAGATCTCGCCCGTTTGGTGGTGGTTTTCGAGGTGGAGGGGGAAGAGGAGGAAGAGGAAGAGGCGGTGGAAGGTTCGGTGGTCGCTATGGCGGCGGCGACGGTGACAGTTATGGCTACGGCAGAGGTGGAGGCGCTGGTCGTAGAGGAGGAGGTTATGGTGGTGGAGGAGGCCCTGAGTGTTACAATTGTGGTCGAACAGGTCACTTGGCGAGAGATTGTTACCAGGGACAGGGTGGTGGAAACCGAAGACGAGGCGGCGGAGGTGGCGGCGGCGGCGGCGGTGGAGGTTGTTTTAACTGCGGGGAGGAAGGGCATTTTGCGAGAGAATGTCCGAACGCTGAAAAATGA 573 0.5829 MAAESQRSTGTVKWFNAQKGFGFIAPDDGGEDLFVHHSAIRSDGYRTLSEGQPVEFAVDYGDAGRTKAVDVSSMARSRPFGGGFRGGGGRGGRGRGGGRFGGRYGGGDGDSYGYGRGGGAGRRGGGYGGGGGPECYNCGRTGHLARDCYQGQGGGNRRRGGGGGGGGGGGGCFNCGEEGHFARECPNAEK 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151748g00001 190 SUPERFAMILY Retrovirus zinc finger-like domains 124 188 IPR036875 GO:0003676|GO:0008270
Stsc151748g00001 190 ProSitePatterns Cold-shock (CSD) domain signature. 21 40 IPR019844 -
Stsc151748g00001 190 Pfam Zinc knuckle 134 148 IPR001878 GO:0003676|GO:0008270
Stsc151748g00001 190 Pfam Zinc knuckle 171 187 IPR001878 GO:0003676|GO:0008270
Stsc151748g00001 190 PANTHER COLD SHOCK DOMAIN PROTEIN 2 3 188 - -
Stsc151748g00001 190 Gene3D - 168 190 - -
Stsc151748g00001 190 Gene3D - 130 160 - -
Stsc151748g00001 190 ProSiteProfiles Cold-shock (CSD) domain profile. 7 73 IPR002059 GO:0003676
Stsc151748g00001 190 Pfam 'Cold-shock' DNA-binding domain 9 72 IPR002059 GO:0003676
Stsc151748g00001 190 FunFam Cold shock protein CspC 7 74 - -
Stsc151748g00001 190 Gene3D - 1 72 IPR012340 -
Stsc151748g00001 190 SMART csp_8 9 74 IPR011129 GO:0003676
Stsc151748g00001 190 ProSiteProfiles Zinc finger CCHC-type profile. 135 148 IPR001878 GO:0003676|GO:0008270
Stsc151748g00001 190 MobiDBLite consensus disorder prediction 80 102 - -
Stsc151748g00001 190 ProSiteProfiles Zinc finger CCHC-type profile. 172 187 IPR001878 GO:0003676|GO:0008270
Stsc151748g00001 190 CDD CSP_CDS 9 71 IPR002059 GO:0003676
Stsc151748g00001 190 PRINTS Cold shock protein signature 31 40 IPR002059 GO:0003676
Stsc151748g00001 190 PRINTS Cold shock protein signature 10 25 IPR002059 GO:0003676
Stsc151748g00001 190 PRINTS Cold shock protein signature 46 64 IPR002059 GO:0003676
Stsc151748g00001 190 SMART c2hcfinal6 171 187 IPR001878 GO:0003676|GO:0008270
Stsc151748g00001 190 SMART c2hcfinal6 134 150 IPR001878 GO:0003676|GO:0008270
Stsc151748g00001 190 SUPERFAMILY Nucleic acid-binding proteins 6 72 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151748g00001 Stsc-Chr151748 6705 7277 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Stsc151748g00001 CSD 3e-25 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151748g00001 - - jre:109013657 181.415