Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151739g00001 ATGGATATGGCTTGTAGTATACCACAGTCAAGAATGTTACATGGGGGTGTAGAACCGGGTTACAGGCACAGGTCAGTAGGTCGTTTTGATTTCAGAGGATGTGCATTTATTGGAAACTCAAGGAATGTTTTGAGATTGCGTTTCAGTGGGATAAACAAAATTAATGATGTTTCTGCTTGTTGGAGTAAATCAAGAGTGATGTCTGTCCATGAACTTAAAGTTTTGAATATGAGGAGTAGATTATATTGTAAGAATCCTTTTATTGGTTCTAGATTAGTTTGGTTAAAGTGCCAGGGTAATGATTCTGTAGCATATGTTAATGGGAATGGGAGGAATGTCGATTATGTGGAAGGATCAGGGGAGGATGCTGGGCTGGGTGTTTCCAGCGCTGAACTCCCTTCAGAAGAAAGGGAGAGTGAAATAGGAGTAGAGGAACAAAGCGTGGATGAGCTCATGGAAATATTACAGAAGGCTTTGAAAGAGCTAGAAGTTGCACGTGTAAATAGTACCATGTTTGAGGAAAAGGTGAAAAAGATATCTGAGACTGCAATTTTCTTGCATGATGAAGCGGCAACTGCTTGGAACAGTGTTAATTCTACCCTTGACATCATTCAAGAAATTTCCAATGAGGAACAAATTGCCAAGGAAGCAGTTCAGAATGCAACCATGGCTCTTTCATTGGCTGAGGCTAGGCTTCAGGTAGCCATAGAATCATTGGAGGCTGCAAAAGAAAAGCGTGATTCTGCACAAGGTTCTAATGAGAGCAATGATGATAACGACATAATGGAAAAGGAGAAGGCACTTTTGGTTGTTCAAGAAGATATTAAGGAGTGCCAAACAAATTTAGCCAACTCTGAGGTGGAGCTTAAGCGGTTGCAAAATAGAAAGGAGGAATTGCAGACGGAGNNNNNNNNNNATGAAATTGCTGAAAAGGCACAGCTGGATGCAGTGAAAGCCGAGGAGGATGTCACAAACATAATGCTTTTAGCGGAGCAAGCTGTTGCCTTTGAACTTGAGGCTACAAAACGTGTAAATGATGCAGAGATTGCCTTACAGCGAGCGGATAAGTCTGTTTCTACTTCTAATTCTGATACCATTGAATCTATACAAGTACAAGATGTTGTGGCTATTCCTGAAGAAGAGAAAGTAGTCCAAGGTTTCTCTGGTGATGTCAGTGTTGAAAGAGACGATCCTATTGATGATGAATCTTTGCTTGGCACGTTATCTTCTGAAACAGTATCTGATAAAACCAGCCAACTTCTGGAAGACATAACACAATCTGATTATATGAGTGATAACGAGAATGCAGTTCAAACTAAAAAACAAGAAATGCAGAAAGATTTGACTAGAGATAGTTCATCCCTTGCTCCCAAGGCATTACTGAAGAAATCTTCCCGATTCTTTTCTGCATCATTCTTCTCTTCTACTGAAGAAGATGGAACTGAGTTCACATCAGCGTCAGTTTTCCAGAGCCTTATGTCATCTGCGAAGAAGCAGTTGTCCAAGCTGGTGTTTGGGTTATTGTTTATGGGAGCAGGGGTTGCCTTCTATGCCAATAGAGGAGAAATGACTGCTCAGCTACTTCAGCAGCCAGATGTTATGGTGACCAGTGTTGATGAAGCTTCGAGTAGTGCAAAGCCATTGATTAAGCAACTAAAGAAACTCCCCAAGAAAATAAAGAAAATTATTGCATCATTACCTCAGCAAGAGGTAAATGAAGAAGAAGCCTCCCTCTTTGACGTGCTATGGTTATTACTTGCAAGCGTTATATTTGTGCCAATATTTCAAAAACTTCCCGGAGGCAGCCCCGTTCTTGGCTACTTGGCTGCTGGAATCTTAATTGGGCCTTATGGTCTCTCTATAATTCGACATGTTCATGGGACAAAGGCAATTGCTGAATTTGGTGTTGTTTTCCTTTTATTCAACATTGGCCTGGAGCTCTCTGTTGAAAGACTTAGTTCAATGAAGAAATATGTCTTTGGATTAGGCTCAACACAGGTTTTGGCAACTGCTGTAGTTGTCGGCTTGGTGGCTCGTATTTGTGGCCAAGCTGGTCCTGCTGCTATTGTCATTGGGAATGGCTTGGCATTATCATCGACTGCTGTTGTTCTGCAGGTGTTGCAGGAGAGAGGTGAGAGCACATCACGGCATGGACGAGCTACATTCTCTGTTTTACTTTTTCAGGATTTGGCAGTTGTGGTTTTGCTGATACTTATTCCTCTAATTTCACCCAATTCTTCCAAAGGAGGGGTTGGTTTTCAAGCCATCGCTGAAGCTCTTGGATTGGCTGCTGTTAAGGCAGCAGTTGCCATTACTGCCATAATCGCAGGTGGACGATTGCTCCTTCGACCAATATATAAGCAGGTTGCAGAAAATCAAAATGCCGAAATATTCTCGGCTAACACACTACTCGTTATTCTTGGGACCAGTCTTCTTACAGCCAGGGCAGGGCTTTCAATGGCATTAGGAGCATTTTTGGCTGGTTTACTACTGGCAGAAACTGAATTTTCGTTACAGGTTGAATCTGATATTGCTCCATACCGTGGCCTTCTTTTGGGGTTATTCTTTATGACGGTTGGAATGTCAATTGATCCAAAACTTCTTGTTTCAAACTTCCCAGTTATCACCAGCACACTGGGACTGTTAATATGTGGCAAGACTATCTTGGTTTCTGTCATCGGTAAAGTCTTTGGGATTTCTATCATTTCTGCCATAAGAACTGGCCTTCTTCTCGCTCCTGGTGGAGAATTTGCATTTGTGGCTTTTGGTGAAGCTGTTAATCAGGGCATAATGTCTTCTGAGATGTCTTCTTTGCTGTTTCTTGTTGTGGGCCTGTCAATGGCCATTACGCCTTGGTTGGCTGCAGGAGGCCAGCTTATTGCTTCCCGTTTTGAGCAGCACGATGTTCGAAGTTTATTACCTGTAGAAAGTGAGACAGATGATCTGCAAGATCATATTATCATTTGTGGGTTTGGGCGAGTTGGCCAGATCATTGCCCAACTTCTTTCTGAGAGACTTATTCCTTTTGTTGCACTAGATGTGAGAAGTGATAGAGTGGCAGTTGGACGTGCCCTGGATCTGCCAGTATACTTTGGCGATGCCGGTAGCCGAGAGGTCCTCCATAAGGTTGGGGCCGAAAGAGCATGTGCTGCAGCAATCACTCTAGATACACCTGGTGCAAATTATAGAACCGTTTGGGCTCTGAGCAAGTACTTCCCAAATGTGAAGACTTTTGTTCGTGCTCATGATGTTGATCATGGATTGAATTTAGAGAAGGCTGGAGCTACTGCTGTTGTTCCAGAGACCTTAGAACCTAGTCTTCAACTAGCAGCTGCTGTATTGGCTCAGGCCAAGCTTCCGACATCAGAGATTGCAGCAACAATAAATGAGTTCAGATCCCGCCATCTGGCTGAGCTCACAGAGCTTTGCGAAGCAAGCGGAAGTTCTCTTGGCTATGGATTCAATAAAATTATGAGCAAACCCAAATCTCAATCACCGGATTCACTTGATGATGCTCAAGTCTCTGAAGGGACATTGGCCGTATGA 3546 0.4287 MDMACSIPQSRMLHGGVEPGYRHRSVGRFDFRGCAFIGNSRNVLRLRFSGINKINDVSACWSKSRVMSVHELKVLNMRSRLYCKNPFIGSRLVWLKCQGNDSVAYVNGNGRNVDYVEGSGEDAGLGVSSAELPSEERESEIGVEEQSVDELMEILQKALKELEVARVNSTMFEEKVKKISETAIFLHDEAATAWNSVNSTLDIIQEISNEEQIAKEAVQNATMALSLAEARLQVAIESLEAAKEKRDSAQGSNESNDDNDIMEKEKALLVVQEDIKECQTNLANSEVELKRLQNRKEELQTEXXXXEIAEKAQLDAVKAEEDVTNIMLLAEQAVAFELEATKRVNDAEIALQRADKSVSTSNSDTIESIQVQDVVAIPEEEKVVQGFSGDVSVERDDPIDDESLLGTLSSETVSDKTSQLLEDITQSDYMSDNENAVQTKKQEMQKDLTRDSSSLAPKALLKKSSRFFSASFFSSTEEDGTEFTSASVFQSLMSSAKKQLSKLVFGLLFMGAGVAFYANRGEMTAQLLQQPDVMVTSVDEASSSAKPLIKQLKKLPKKIKKIIASLPQQEVNEEEASLFDVLWLLLASVIFVPIFQKLPGGSPVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSTQVLATAVVVGLVARICGQAGPAAIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQDLAVVVLLILIPLISPNSSKGGVGFQAIAEALGLAAVKAAVAITAIIAGGRLLLRPIYKQVAENQNAEIFSANTLLVILGTSLLTARAGLSMALGAFLAGLLLAETEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLVSNFPVITSTLGLLICGKTILVSVIGKVFGISIISAIRTGLLLAPGGEFAFVAFGEAVNQGIMSSEMSSLLFLVVGLSMAITPWLAAGGQLIASRFEQHDVRSLLPVESETDDLQDHIIICGFGRVGQIIAQLLSERLIPFVALDVRSDRVAVGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANYRTVWALSKYFPNVKTFVRAHDVDHGLNLEKAGATAVVPETLEPSLQLAAAVLAQAKLPTSEIAATINEFRSRHLAELTELCEASGSSLGYGFNKIMSKPKSQSPDSLDDAQVSEGTLAV 1181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151739g00001 1181 Pfam TrkA-N domain 986 1099 IPR003148 GO:0006813
Stsc151739g00001 1181 FunFam K(+) efflux antiporter 2 chloroplastic 981 1145 - -
Stsc151739g00001 1181 Gene3D - 574 961 IPR038770 -
Stsc151739g00001 1181 Coils Coil 307 312 - -
Stsc151739g00001 1181 NCBIfam monovalent cation:proton antiporter-2 (CPA2) family protein 585 864 IPR004771 GO:0006812|GO:0008324|GO:0016020
Stsc151739g00001 1181 Coils Coil 148 168 - -
Stsc151739g00001 1181 FunFam K(+) efflux antiporter 2 chloroplastic 574 959 - -
Stsc151739g00001 1181 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 982 1123 IPR036291 -
Stsc151739g00001 1181 ProSiteProfiles RCK N-terminal domain profile. 985 1107 IPR003148 GO:0006813
Stsc151739g00001 1181 Coils Coil 275 302 - -
Stsc151739g00001 1181 PANTHER K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC 183 1172 - -
Stsc151739g00001 1181 Pfam Sodium/hydrogen exchanger family 582 953 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
Stsc151739g00001 1181 Gene3D - 981 1145 - -
Stsc151739g00001 1181 MobiDBLite consensus disorder prediction 1162 1181 - -
Stsc151739g00001 1181 MobiDBLite consensus disorder prediction 243 262 - -
Stsc151739g00001 1181 Coils Coil 225 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151739g00001 Stsc-Chr151739 6733 16986 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151739g00001 1 1181 Inorganic Solute Cotransporters AT4G00630 67.080 0.0 1408
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151739g00001 K03455 - gmx:100818163 1769.59