Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151738g00001 ATGGATCTGTTTCAACAGCATGTATTCAAGATGGAGCAAGAAGAGTACACTAAAGAGGAAATCAATTGGAGTTATGTTGAATTTGTGGATAATCAGGATGTTCTTGATCTTATTGAGAAGAAACCTGGGGGAATAATTGCTCTTCTTGATGAAGCCTGCATGTTCCCCAAGTCAACTCATGAGACTTTTGCGCAAAAGATGTACCAGACATATAAAGCACACAAGCGCTTCAGCAAACCAAAACTTTCTCGGACAAACTTCACAATTAACCATTATGCTGGAGATGTGACGTACCAAGCAAATTATTTCCTTGATAAAAATAAAGATTACGTAGTTGCAGAGCATCAAGCTCTTTTATGTGCATCCAAGTGCTCATTTGTTGCAAATCTTTTCCCTCCATTACCTGAGGAGACATCAAAGCAGTCAAAATTCTCCTCCATTGGTTCACAGTTTAAGCAACAACTACAATCTCTCATGGAGACACTGAACACAACAGAACCACATTACATCAGGTGTGTGAAGCCAAATACAGTCTTGCAGCCAGGAATCTTTGAGAACTTCAATGTCTTGAATCAGTTAAGATGTGGAGGAGTACTTGAGGCGATAAGGATTAGTTGCGCCGGGTATCCAACAAAAAGAACATTCGAAGAGTTCCTTGACCGTTTCGGAATGCTAGCTCCGGCAGTCCTTGATGGGTCAGATGAGAAAAAGGCTGCTATTGCCATATGTGATAAGATGGGATTACAAGGCTATCAAATGGGGAAAACAAAGGTGTTCCTCAGAGCTGGCCAGATGGCCGAATTAGATGCACGAAGAGCCGAAGTCTTAGCCAAAGCAGCCAGACTCATACAGAGACAAATCCGTACACATTTAGCAAGGAAAGAGTTTATCACCTTGAGAAATGCTACAATTCATATCCAGAAAATTTGGAGAGCAAAACTTGCACGTAAACTCTACGAACATATGAGGAGGGAAGCAGCTTCAATCAGGATACAGAAGCATGTGCGTGCACACAGAGAAAGAATGAATTATACATCATTACAATCATCTTCTATAGTAATTCAATCTGCCATGAGAGCAGTAGCAGCACGAAACGAATTTAGGTACCGAAGACAAACGAAGGCTTCAATCAAACTTCAGACACAATGGAGAAGAGTTCAAGCTCTTTCTGATTACAAACAACAAAAGAGAGCAACTATTATACTTCAATGTCTCTGGAGAGCTAGAGTAGCTAGAAGAGAGCTCAGAAAGCTTCGGATAGCTGCAAGGGATACCGGAGCACTTAAGGAAGCAAAGGACAAGTTGGAGAAGCGTGTTGAAGAGCTTACATGGAGATTAGACATCGAAAAACACATGCGGATTGACCTTGAAGAAGCAAAAGGACAAGAGATTGCAAAACTACAAAACACTTTACAAGAAATGCAAGGTCAGCTAGATGAAGCTCGCGCAGCAATTATACATGAGAGAGAAGCAGCAAAACTAGCAATTGAACAAGCACCACCAGTAATTAAAGAGGTTCCAGTTGTGGACAACACCAAGCTAGAGTTACTAACAAATAAAAATGAGGAACTGGAGACTGAAGTAGAAGAGTTGAAGAAGAAGATTAAAGAATTTGAAGAAAAGTGCTCAGCAATTGAAAACGAGAATCAAGCTAGGATTAAAGAGGCAGAAGAAGCACAAATAAAAGCAACACAACTTCAAGAGACTATTGAAAGATTGGAAGTGAGCTTGTCCAACCTCGAAACCGAAAATCAAGTGCTATGCCAGCAGGCATTGGTAGAATCGAAAAATGAAGATCTTTCGGAAGAGATCAAAATCCTAAAGGATCAAATAGCAAACCTAGAATCGGAGAACGAAGTCCTGCGGCGCCAGGCAGCAGCAGCTGCCATGGAGCAGAAAGTTCACCCTGATATAATAACAACAAACCAGGAAATTACTGCTGATCAACAAGATCAACATATTCAGCAAAGGATTGTAGCAGATAATGTGACTCCACAAATCAAGAATTTGGATAATGGACATCTAGCCAAGGACGAATGCCATGGAAGAAAAGAACCAAGAGCAGCTGTCTCCTTCCTTACAAAACAAAGATCACTCACAGACAGGCAGCAGGTATGTTTTTCTGAGACCGAAAGATTTCGAGAGACCATGAACTTGCGCATTGAAAAAAATGTTGCTTGTATTGTTTATAAAGCACTTCTTCATTGGAGATCCTTTGAAGCTGAGAAGACACATATATTTGATAAAATTAGTCACACCATTCGATCATCAATCGAGAATAAAGAAGGAATCAATGATCTAGCATATTGGCTTTCAACAACTTCAACACTTCTGTTTTATCTGCAATGCACACTCAAAGTCAGCAATACAACCAAGGCAGTGTCGCGCAATCGAAACTCCCCTGCCACTCTATTTGGGAAAATGGCACAAGGTTTACGTTCATCTTCATTGGGCATGGGGATTTCAAGTGGCTATAGTGGAATGGTGGACAAGCTCAATGACCAATCTAAAGTGGAAGCCAAGTACCCAGCAATTCTGTTTAAGCAACATCTGACTGCATATGTTGAGAAGATATATGGAATGATCCGTGACAGTTTAAAGAAGGAGATCACCCCATTCTTGAATCTGTGTATTCAGGCACCAAGAGCCATAAGAACCAGATCAATAAGAGGGTCATCAAGAAACATCCATTCAAATATACTTGCAAAACAACAGGCATTGCACATGCACTGGAAAAGCATTGTCAGCAAGTTAGATGAAATCTTGGGTGTACTATCTGATAACTATGTCCCTTCCATGATAACTGGGAAGATATTTAGTCAGGTTTTCTCATTCATGAATGTCCAACTCTTTAACAGTTTGTTGCTTCGTCGTGAGTGCTGCTCGCTTAGCAATGGAGAATATCTGAAGGCAGGTTTGCATGAGTTGGAACTGTGGTCTCTCAAAGCAACAGATCAGTTTGCAGGGTCATCTTGGCATGAACTCAAACAAATACGCCAAGCCGTTGGATTCCTGGTCTTGCATCAAAAGGCTCACAAATCGTTGGAAGAGATCACCAATGAACTCTGCCCGGTGTTAAGTATTCCACAAATATATCGTATTGGAACTATGTTTTGGGATGACAAATATGGATCTCAAGGATTATCTCCAGAAGTCATAAGTAGAATGAGAGTACTTATGACAGAAGACTCGACAAACATGCCCAATAACTCATTCCTTCTTGAAGTGGACTCGAGCATACCATTCTTGATGGAGGAGATGTTCCGGTCTATGAGTGACATCCGACTGTCAGATATGGAAGTGGATCCACCACCAATTCTCAGGCAAAGGTCTGATTTCCAATTCTTGTTGCAACACATTGAAAGTGATTCTCAGTAA 3378 0.4091 MDLFQQHVFKMEQEEYTKEEINWSYVEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKMYQTYKAHKRFSKPKLSRTNFTINHYAGDVTYQANYFLDKNKDYVVAEHQALLCASKCSFVANLFPPLPEETSKQSKFSSIGSQFKQQLQSLMETLNTTEPHYIRCVKPNTVLQPGIFENFNVLNQLRCGGVLEAIRISCAGYPTKRTFEEFLDRFGMLAPAVLDGSDEKKAAIAICDKMGLQGYQMGKTKVFLRAGQMAELDARRAEVLAKAARLIQRQIRTHLARKEFITLRNATIHIQKIWRAKLARKLYEHMRREAASIRIQKHVRAHRERMNYTSLQSSSIVIQSAMRAVAARNEFRYRRQTKASIKLQTQWRRVQALSDYKQQKRATIILQCLWRARVARRELRKLRIAARDTGALKEAKDKLEKRVEELTWRLDIEKHMRIDLEEAKGQEIAKLQNTLQEMQGQLDEARAAIIHEREAAKLAIEQAPPVIKEVPVVDNTKLELLTNKNEELETEVEELKKKIKEFEEKCSAIENENQARIKEAEEAQIKATQLQETIERLEVSLSNLETENQVLCQQALVESKNEDLSEEIKILKDQIANLESENEVLRRQAAAAAMEQKVHPDIITTNQEITADQQDQHIQQRIVADNVTPQIKNLDNGHLAKDECHGRKEPRAAVSFLTKQRSLTDRQQVCFSETERFRETMNLRIEKNVACIVYKALLHWRSFEAEKTHIFDKISHTIRSSIENKEGINDLAYWLSTTSTLLFYLQCTLKVSNTTKAVSRNRNSPATLFGKMAQGLRSSSLGMGISSGYSGMVDKLNDQSKVEAKYPAILFKQHLTAYVEKIYGMIRDSLKKEITPFLNLCIQAPRAIRTRSIRGSSRNIHSNILAKQQALHMHWKSIVSKLDEILGVLSDNYVPSMITGKIFSQVFSFMNVQLFNSLLLRRECCSLSNGEYLKAGLHELELWSLKATDQFAGSSWHELKQIRQAVGFLVLHQKAHKSLEEITNELCPVLSIPQIYRIGTMFWDDKYGSQGLSPEVISRMRVLMTEDSTNMPNNSFLLEVDSSIPFLMEEMFRSMSDIRLSDMEVDPPPILRQRSDFQFLLQHIESDSQ 1125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151738g00001 1125 SMART iq_5 275 297 IPR000048 GO:0005515
Stsc151738g00001 1125 SMART iq_5 394 416 IPR000048 GO:0005515
Stsc151738g00001 1125 SMART iq_5 323 345 IPR000048 GO:0005515
Stsc151738g00001 1125 SMART iq_5 371 393 IPR000048 GO:0005515
Stsc151738g00001 1125 SMART iq_5 346 368 IPR000048 GO:0005515
Stsc151738g00001 1125 SMART iq_5 298 320 IPR000048 GO:0005515
Stsc151738g00001 1125 Coils Coil 425 452 - -
Stsc151738g00001 1125 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 327 423 IPR027417 -
Stsc151738g00001 1125 SMART MYSc_2a 1 274 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc151738g00001 1125 ProSiteProfiles IQ motif profile. 395 424 IPR000048 GO:0005515
Stsc151738g00001 1125 SMART DIL_2 937 1044 IPR002710 -
Stsc151738g00001 1125 Gene3D - 209 271 - -
Stsc151738g00001 1125 Pfam IQ calmodulin-binding motif 397 416 IPR000048 GO:0005515
Stsc151738g00001 1125 Pfam IQ calmodulin-binding motif 326 344 IPR000048 GO:0005515
Stsc151738g00001 1125 Pfam IQ calmodulin-binding motif 300 319 IPR000048 GO:0005515
Stsc151738g00001 1125 Pfam IQ calmodulin-binding motif 278 296 IPR000048 GO:0005515
Stsc151738g00001 1125 ProSiteProfiles IQ motif profile. 276 303 IPR000048 GO:0005515
Stsc151738g00001 1125 ProSiteProfiles Dilute domain profile. 748 1062 IPR002710 -
Stsc151738g00001 1125 FunFam unconventional myosin-Va 278 326 - -
Stsc151738g00001 1125 Pfam DIL domain 938 1041 IPR002710 -
Stsc151738g00001 1125 ProSiteProfiles IQ motif profile. 299 328 IPR000048 GO:0005515
Stsc151738g00001 1125 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 327 IPR027417 -
Stsc151738g00001 1125 ProSiteProfiles Myosin motor domain profile. 1 273 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc151738g00001 1125 ProSiteProfiles IQ motif profile. 324 351 IPR000048 GO:0005515
Stsc151738g00001 1125 Coils Coil 457 491 - -
Stsc151738g00001 1125 Gene3D - 274 326 - -
Stsc151738g00001 1125 Gene3D - 327 373 - -
Stsc151738g00001 1125 Gene3D - 374 422 - -
Stsc151738g00001 1125 ProSiteProfiles IQ motif profile. 347 376 IPR000048 GO:0005515
Stsc151738g00001 1125 CDD MyosinXI_CBD 726 1085 IPR037975 GO:0007015
Stsc151738g00001 1125 Gene3D - 3 165 - -
Stsc151738g00001 1125 FunFam unconventional myosin-Va 374 422 - -
Stsc151738g00001 1125 Pfam Myosin head (motor domain) 3 261 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc151738g00001 1125 Gene3D Kinesin motor domain 166 208 IPR036961 -
Stsc151738g00001 1125 Coils Coil 265 285 - -
Stsc151738g00001 1125 Coils Coil 514 631 - -
Stsc151738g00001 1125 PANTHER MYOSIN 3 1050 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151738g00001 Stsc-Chr151738 11621 21440 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151738g00001 4 1120 Myosins gene family AT2G31900 67.258 0.0 1526
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151738g00001 K10357 - gmx:100817933 1862.43