Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151723g00001 ATGGATACACATGAGGATGAGCAACACTCTAATCCCTTCGCCACCATCGATTCCGATTCCGACTCGGTGAGTTGCTTCGTCACCGATCTCTTCGAAACTCGCTCCGACCGTTCTCGTCATTGCTCATGCGGCGACGTCAACATAAATCCCTTCTCCGGCGTCGTTTGCGACCTTCACGGGGAAGCATCGTTAGGGTTAGGGTTTGGAGATGAAATTGGATCCCAAAACGACGATCACCGTGCCGTTTTCGATTTCTCCATAGGTGATAATAATGGTTTGGGTGGGCTTAGGGTTGTTGGATTTGGATCCGATTCGGATTCGGGTGGAGAGGAAGGTGAGCTTGATCGCGCTATGGAGGAGTTCGGTTCTTCTGTTGTCCGTGGTTTTAGTGATGATGATGATGATCATAGGGTTGATGGTAGTGGGTTTGATGATTTTGATGTTAGGTTGTGTTGGGATAGCCTCTGTTTGGAGGATCAGAGGACCTTGAATGAGGGTTTTGAATGGGAGGAGGTGGAGGAGAGGGTGAATGATAGGGAAGATTTGAGTTTGGCCATTGATGAGGTTGAGGTTGATGATCAATCAGTGGCATCAGGGTTTTCGCACAGCGAGGATCCCGGCGAGGAGGCGTTGAGGTACCTGGAGTGGGAGATTCTCTTGGCTGTGAACAATTTGGATCGGAATTCAATCTTGGAACATGAAGCCAATTTGGATTCTTACTTAGCAGTTGGGGATGGTTACATGTACACTGCTGAGTATGATGTTCTGTTTGGGCAGTTTCTGGAGAATGACAATGCCTTGAAGGGTAGCCCGCCGGCGGCGAAGAGTGTTGTGGAGAATCTTCCTGTGGTTGAGTTGACAAAGGAGGAGTTGCAGGGGAAGAATGTGGCATGCGCGATTTGTAAAGATGAGATATTGTTGGAGGAGAAGGTGACTAGGCTTCCTTGCTCACACTGTTATCATGGGGACTGCATTATGCCTTGGTTGAGTATTCGCAACACGTGCCCTGTCTGTCGATTTGAGTTGCCTACCGATGATCCTGAATACGAGCAGAGGAAGAGCCGGAGGGCTGCTCATGAGATGTTGGAGCTTGCATTGCAGAGGCAAGTTTGA 1113 0.4915 MDTHEDEQHSNPFATIDSDSDSVSCFVTDLFETRSDRSRHCSCGDVNINPFSGVVCDLHGEASLGLGFGDEIGSQNDDHRAVFDFSIGDNNGLGGLRVVGFGSDSDSGGEEGELDRAMEEFGSSVVRGFSDDDDDHRVDGSGFDDFDVRLCWDSLCLEDQRTLNEGFEWEEVEERVNDREDLSLAIDEVEVDDQSVASGFSHSEDPGEEALRYLEWEILLAVNNLDRNSILEHEANLDSYLAVGDGYMYTAEYDVLFGQFLENDNALKGSPPAAKSVVENLPVVELTKEELQGKNVACAICKDEILLEEKVTRLPCSHCYHGDCIMPWLSIRNTCPVCRFELPTDDPEYEQRKSRRAAHEMLELALQRQV 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151723g00001 370 Pfam Ring finger domain 298 339 IPR001841 -
Stsc151723g00001 370 SUPERFAMILY RING/U-box 286 345 - -
Stsc151723g00001 370 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 259 345 IPR013083 -
Stsc151723g00001 370 SMART ring_2 298 338 IPR001841 -
Stsc151723g00001 370 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 195 343 - -
Stsc151723g00001 370 FunFam E3 ubiquitin-protein ligase RING1-like 259 345 - -
Stsc151723g00001 370 ProSiteProfiles Zinc finger RING-type profile. 298 339 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151723g00001 Stsc-Chr151723 14148 15260 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151723g00001 84 354 C3H Transcription Factor Family AT3G02340 42.807 7.60e-47 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151723g00001 - - gmx:100812037 436.417