LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc151722g00001	ATGGGGAATCCAAGAGGAGGAGGAGGAGTTCTTCTTCTTCATCTTCTTCTTCCATGTTCTGTTGCATTTTTCTTGTTTTTTAGCACTGCAAGTGCTTTGCTTTCTCCAAAAGGAGTGAACTTTGAAGTTCAAGCTTTAATGGGGATCAAGAACTCACTGGTGGATCCTCATGGTGTTTTGGATAATTGGGATGCTGATGCTGTTGATCCTTGTAGCTGGACTATGGTTACTTGTTCTTCTGAGAACTTGGTCATTGGATTGGGTACTCCAAGTCAGAGTTTATCTGGTACTCTCTCTCCAAGCATAGGAAACTTAACCAACCTTCAGATTGTGCTGCTTCAGAATAACAACATAACTGGATCAATCCCTTCAGAGTTAGGGAAACTTCCTAAGCTTCAAACTCTTGATCTCTCTAATAACTTCTTCAGTGGTGAAATTCCACCCTCACTTGGTCACTTGAGAAGTTTGCAATACATGAGGCTCAATAATAACAGTCTTCATGGTGAATTGCCAGAATCATTGGCTAATATGACTCAGCTTGCTTTTCTTGACTTGTCCTACAACAATATAAGTGGACCTATACCAAGAATTTTGGCTAAATCCTTCAACATTGTTGGAAACCCCCTTGTTTGTGCAACTGGTAAAGAACCAAACTGCCATGGCATGACACTGATGCCAATGTCCATGAACTTAAATGGCACTGAAGATGCATTACCAGCGAGCAAACCGAAATCTCATAAAATGGCAATTGCCTTTGGCTTGAGTCTTGGATGTCTCTGCCTCATAGTTCTCGGTTTCGGCCTTGTTCTTTGGTGGAGGCACAAGCACAATCAACAAGCATTCTTTGATGTTAAAGACCGGCATCACGAAGAAGTGTACCTTGGAAACTTGAAGAGGTTCCAATTCAGAGAACTCCAAGTTGCTACCAACAACTTCAGCAGCAAGAACATACTTGGAAAGGGTGGTTTTGGAAATGTCTACAAAGGAGTTCTCTCTGATAGCACTCTTGTAGCTGTCAAGAGGCTGAAAGATGGAAATGCCATTGGAGGAGAGATACAATTTCAGACTGAAGTCGAAATGATCAGCCTCGCCGTCCACCGCAACCTCCTCAGACTCTATGGATTCTGCATGACCCCAACAGAAAGGCTCTTAGTTTACCCTTACATGTCCAATGGCAGTGTCGCTTCACGTCTTAAGGGTAAGCCGGTGTTGGATTGGGGAACAAGGAAGAACATTGCATTAGGAGCAGCAAGGGGACTATTATATCTTCATGAGCAATGTGATCCGAAGATAATACATAGAGATGTGAAGGCTGCAAACATACTGCTTGATGACTATTGTGAAGCAGTGGTTGGTGATTTCGGGTTGGCGAAGCTTTTAGATCATCAAGATTCACATGTCACAACTGCAGTTAGGGGCACCGTAGGGCACATAGCCCCAGAGTATCTATCAACAGGACAATCATCTGAGAAAACTGATGTGTTTGGATTCGGGATTCTCCTCTTGGAATTGATCACAGGACAAAGGGCACTAGAATTCGGAAAAGCTGCTAACCAAAAAGGAGCCATGCTTGATTGGGTAAAGAAAATTCATCAGGAGAAGAAGCTCGAGTTGCTCGTGGACAAGGATCTTAAAGGGAACTATGACAGGATTGAGCTTGAGGAAATGGTTCAAGTGGCATTGTTATGTACTCAAAACCTTCCGGGGCATAGACCGAAGATGTCTGAAGTTGTAAGAATGCTTGAAGGTGATGGATTAGCAGAGAGATGGGAAGCTTCTCAAAGAGCTGATACTAGTGGTGCTAATGCTGCTTCTACTACTACCACCACAAAATGCAAACCTCATGAATCATCTTTATCAGATAGGTATTCTGATCTCACTGATGATTCTTTGTTGTTAGTCCAAGCCATGGAGCTATCAGGACCAAGGTGA	1932	0.4306	MGNPRGGGGVLLLHLLLPCSVAFFLFFSTASALLSPKGVNFEVQALMGIKNSLVDPHGVLDNWDADAVDPCSWTMVTCSSENLVIGLGTPSQSLSGTLSPSIGNLTNLQIVLLQNNNITGSIPSELGKLPKLQTLDLSNNFFSGEIPPSLGHLRSLQYMRLNNNSLHGELPESLANMTQLAFLDLSYNNISGPIPRILAKSFNIVGNPLVCATGKEPNCHGMTLMPMSMNLNGTEDALPASKPKSHKMAIAFGLSLGCLCLIVLGFGLVLWWRHKHNQQAFFDVKDRHHEEVYLGNLKRFQFRELQVATNNFSSKNILGKGGFGNVYKGVLSDSTLVAVKRLKDGNAIGGEIQFQTEVEMISLAVHRNLLRLYGFCMTPTERLLVYPYMSNGSVASRLKGKPVLDWGTRKNIALGAARGLLYLHEQCDPKIIHRDVKAANILLDDYCEAVVGDFGLAKLLDHQDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQRALEFGKAANQKGAMLDWVKKIHQEKKLELLVDKDLKGNYDRIELEEMVQVALLCTQNLPGHRPKMSEVVRMLEGDGLAERWEASQRADTSGANAASTTTTTKCKPHESSLSDRYSDLTDDSLLLVQAMELSGPR	643

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc151722g00001	643	SUPERFAMILY	Protein kinase-like (PK-like)	289	582	IPR011009	-
	Stsc151722g00001	643	Pfam	Leucine rich repeat N-terminal domain	42	79	IPR013210	-
	Stsc151722g00001	643	ProSitePatterns	Protein kinases ATP-binding region signature.	318	340	IPR017441	GO:0005524
	Stsc151722g00001	643	FunFam	Somatic embryogenesis receptor kinase 1	281	388	-	-
	Stsc151722g00001	643	SMART	serkin_6	312	581	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc151722g00001	643	Gene3D	Phosphorylase Kinase; domain 1	281	388	-	-
	Stsc151722g00001	643	PANTHER	SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1	21	592	-	-
	Stsc151722g00001	643	Pfam	Protein kinase domain	313	578	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc151722g00001	643	MobiDBLite	consensus disorder prediction	595	614	-	-
	Stsc151722g00001	643	FunFam	Putative LRR receptor-like serine/threonine-protein kinase	39	221	-	-
	Stsc151722g00001	643	ProSiteProfiles	Protein kinase domain profile.	312	591	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc151722g00001	643	Gene3D	Ribonuclease Inhibitor	39	221	IPR032675	-
	Stsc151722g00001	643	FunFam	Somatic embryogenesis receptor-like kinase 1	389	601	-	-
	Stsc151722g00001	643	MobiDBLite	consensus disorder prediction	591	623	-	-
	Stsc151722g00001	643	Pfam	Leucine Rich repeats (2 copies)	106	146	IPR025875	-
	Stsc151722g00001	643	SUPERFAMILY	L domain-like	42	204	-	-
	Stsc151722g00001	643	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	431	443	IPR008271	GO:0004672\|GO:0006468
	Stsc151722g00001	643	Gene3D	Transferase(Phosphotransferase) domain 1	389	601	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc151722g00001	Stsc-Chr151722	5613	9200	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc151722g00001	19	643	Receptor kinase-like Gene Family	AT5G16000	78.323	0.0	1008

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-II	Stsc151722g00001		Pkinase	5.8e-44	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc151722g00001	-		-	gmx:100798412	1118.61