Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151719g00003 ATGGGCTTTTTCCGTCGACTCTTTCGCGCCACAAAAAAACCCACACAAACTCCTTCTGCCTCCAAGCCGCCCAACAGGAGATGGACATTCGCCAAACACCCACGCTCCTCCTCCTCCTCCTCCTTAGATGCCAACAAGCATGCCATGGCCGTCGCAGCTGCCACTGCAGCCGTTGCTGAGGCCGCTCTGGCAGCCGCCCACGCCGCCGCCGAGGTTGTTCGCCTCACCAGCGCCGGAGCTGCCCCAACTACCCCCACCACTATGAGAAGGCCCGCTGTAGCCGTGGCCGCCGTTAAGATACAATCGGCATTTCGTGGTTACTTGGCAAGGAGGGCATTGAGAGCGCTAAAAGCATTGGTGAAGTTGCAAGCATTGGTTAGGGGCCACATTGTGAGAAAGCAAACAGCAGATATGCTAAGGCGCATGCAAACAATGGTGCGGCTTCAGGCACAGGCACGTGCCACTCGTGTGCTCTCACATACTAATACTATGCACTCTTTCAAGTCTTCACTACTTTCCCATTACCCTGTCCCTGAAGAATATGAGCACCACCTTGGTGTCTATAGTACAAAACTTGATGGGTCTTCTATTTTGAAGAGATGTAGTTCCAATGCGAACTTTAGAAACAGTGAGCGGGAGAGGGCACGGTTAGAGCGATGGATGGAAGAAAGAGAAAGCAGAGAGAGAAATAATAATAATAATAATGATGAGGATGAGAAGATGAGTTACAAGATTCTGGAAGTAGATACATGGAAACCACGAGTATTGAAAGGAAAAGAAGAAGCATTATTATTATATTCAAGGACTGCGGATAACAGCCCGCAAGCATCATCATCATCTAGGAGGCATGGCGGTGGAAGCAGAAGCAGGAAGGGTCCCTTTACACCCACAAGGAGCGAGTGCTCCTTCCATGGCTATGCAGGGCACCCCAACTACATGTCAAACACACTCTCTTCTACAGCTAAGGTTAGATCTCAGAGTGCACCAAGACAAAGACTCGACTATGACAGTGTTCTTCAGGGTGTTTGGGATGTCATGCCTTCTAATACTCATAATAATAATCATCGTCATTCACATTCGAGGAGCAAGGCGCATCTACCACCACCCTCCAGTAGTACTCGTTTCAATAGAATTGGGACTACCAATTTAAGGTGA 1155 0.4926 MGFFRRLFRATKKPTQTPSASKPPNRRWTFAKHPRSSSSSSLDANKHAMAVAAATAAVAEAALAAAHAAAEVVRLTSAGAAPTTPTTMRRPAVAVAAVKIQSAFRGYLARRALRALKALVKLQALVRGHIVRKQTADMLRRMQTMVRLQAQARATRVLSHTNTMHSFKSSLLSHYPVPEEYEHHLGVYSTKLDGSSILKRCSSNANFRNSERERARLERWMEERESRERNNNNNNDEDEKMSYKILEVDTWKPRVLKGKEEALLLYSRTADNSPQASSSSRRHGGGSRSRKGPFTPTRSECSFHGYAGHPNYMSNTLSSTAKVRSQSAPRQRLDYDSVLQGVWDVMPSNTHNNNHRHSHSRSKAHLPPPSSSTRFNRIGTTNLR 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151719g00003 384 Pfam IQ calmodulin-binding motif 117 134 IPR000048 GO:0005515
Stsc151719g00003 384 Pfam IQ calmodulin-binding motif 96 114 IPR000048 GO:0005515
Stsc151719g00003 384 MobiDBLite consensus disorder prediction 268 283 - -
Stsc151719g00003 384 MobiDBLite consensus disorder prediction 267 306 - -
Stsc151719g00003 384 MobiDBLite consensus disorder prediction 346 384 - -
Stsc151719g00003 384 MobiDBLite consensus disorder prediction 11 43 - -
Stsc151719g00003 384 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 89 138 IPR027417 -
Stsc151719g00003 384 Coils Coil 210 237 - -
Stsc151719g00003 384 SMART iq_5 115 136 IPR000048 GO:0005515
Stsc151719g00003 384 SMART iq_5 92 114 IPR000048 GO:0005515
Stsc151719g00003 384 ProSiteProfiles IQ motif profile. 117 144 IPR000048 GO:0005515
Stsc151719g00003 384 Pfam Protein of unknown function (DUF4005) 273 335 IPR025064 -
Stsc151719g00003 384 ProSiteProfiles IQ motif profile. 96 121 IPR000048 GO:0005515
Stsc151719g00003 384 MobiDBLite consensus disorder prediction 364 384 - -
Stsc151719g00003 384 Gene3D - 93 146 - -
Stsc151719g00003 384 PANTHER IQ-DOMAIN 5-RELATED 4 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151719g00003 Stsc-Chr151719 11416 14585 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151719g00003 1 333 IQD Protein Family AT5G07240 48.580 6.08e-58 193
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151719g00003 - - ahf:112711676 406.371