Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151717g00001 ATGGACTCTCGCTTGCCGAAAAATACCAAGTTTTTGGCTGATGCCGGAGTCTCTAACTCTGCTATTGGCTATTTGATTCGTGTCAGAGTGGGTGCGCTCATATGCTCTGACCTGAGGAAGACTGTGGATGAAGTAAAGAAATTAGGGATTGATCCTTCACAGGTTAAGTTTGCTATAGCTTTGTTAGCCAAAAGGAGTGATCGTAAATTACTTTGGGATGCCAAAGTTGATATCTTGAAGAGCTGGGGTTGGTCTAAAGAAGTAATGTCCAAAGCATTCAAGACGAACCCTTTATATATGCTAACATCTAAGGATAAGATTAATGAGGTGATGAAACTTTGGGTCAATCAATTAGGTTGGGACGCTTTGGCCCTTGCCAAGATTCCATTTATTTTTGGATATAGTCTGGAGAGAAGAATCATTCCCAGGGCTTTTGTTCTCCAATATTTACTTGCAAAAGGTTTGAGAAACAAGAATGATAATATAAATACGCCGTTTTTTGTTTCGGAAGCGGAGTTCATTGAAAAGTTTGTGGAATGTTTTAAGGAGGAAAGGTCTCAACTGCTGAAGATATACTATGACAAAAAAGGATCTTCATGA 600 0.3917 MDSRLPKNTKFLADAGVSNSAIGYLIRVRVGALICSDLRKTVDEVKKLGIDPSQVKFAIALLAKRSDRKLLWDAKVDILKSWGWSKEVMSKAFKTNPLYMLTSKDKINEVMKLWVNQLGWDALALAKIPFIFGYSLERRIIPRAFVLQYLLAKGLRNKNDNINTPFFVSEAEFIEKFVECFKEERSQLLKIYYDKKGSS 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151717g00001 199 Pfam mTERF 6 162 IPR003690 GO:0003690|GO:0006355
Stsc151717g00001 199 SMART mt_12 90 121 IPR003690 GO:0003690|GO:0006355
Stsc151717g00001 199 SMART mt_12 122 156 IPR003690 GO:0003690|GO:0006355
Stsc151717g00001 199 SMART mt_12 23 51 IPR003690 GO:0003690|GO:0006355
Stsc151717g00001 199 Gene3D Transcription termination factor 3, mitochondrial 1 191 IPR038538 -
Stsc151717g00001 199 PANTHER CGI-12 PROTEIN-RELATED 4 183 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151717g00001 Stsc-Chr151717 6806 7405 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Stsc151717g00001 mTERF 1.5e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151717g00001 K15031 - gmx:102666739 220.705