Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151711g00002 ATGGCAGTTTTGTCTAGGCTTTTCCACAAGCTTTGTTACAAGATCATAATCCTATTGGCATTCCTTCTAACCGAACTAATCATCTTCATCAGGAAGCTAAAATCATCATCATACACAGGTCCAATTACAACAAAGAAGTACCTCAGATTCATCGAAGAGAAGAACCCAACGATTTGCTATAGCAAGAGGAGTAGTAGTGGTGGATTATTGTTGAAGCTGAAACCGCCACGGCACGTGGAGTGCACGCTTTGCTTATCGGAGTTCAACGAAGGGGAGAAGCTGAGGAGGCTGAAATGCCAACATACGTTTCACAGGGATTGCTTGGACACGTGGCTTAAGGACTACTGCGCCACGTGTCCATTGTGTAGGTTGAAAGTGTTGCCAGATGATGTTGTTTCCAGGCACCGTGAGCTTAGAAAGCAAGTAGATTCTAACGGTAACGGTGAACAATTCACGTATTTTTTAGCCGTCTTATGTGGCGGCGGTAACACTTTGCAAAGTTAG 504 0.4444 MAVLSRLFHKLCYKIIILLAFLLTELIIFIRKLKSSSYTGPITTKKYLRFIEEKNPTICYSKRSSSGGLLLKLKPPRHVECTLCLSEFNEGEKLRRLKCQHTFHRDCLDTWLKDYCATCPLCRLKVLPDDVVSRHRELRKQVDSNGNGEQFTYFLAVLCGGGNTLQS 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151711g00002 167 SUPERFAMILY RING/U-box 58 129 - -
Stsc151711g00002 167 ProSiteProfiles Zinc finger RING-type profile. 81 123 IPR001841 -
Stsc151711g00002 167 Pfam Ring finger domain 80 123 IPR001841 -
Stsc151711g00002 167 SMART ring_2 81 122 IPR001841 -
Stsc151711g00002 167 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 130 IPR013083 -
Stsc151711g00002 167 PANTHER - 1 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151711g00002 Stsc-Chr151711 16894 17397 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151711g00002 80 134 C3H Transcription Factor Family AT1G15100 49.091 5.67e-16 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151711g00002 K16282 - gmx:102668078 174.866