Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151709g00003 ATGGCTGAGCTGAAAGAATTCGAGCGCTTCGACGTCGTTTCAGACCATTCAGACCACTACTTTTCCGAACCACCCGCTGAAAACACCAAGAAACAGAAAGAAAACCGCAACCCGGAAGCAAGCAACCAAGCTGCCCGTAACTGCTTCAGCAACACGGGCAGCAACGTGTACAAGAACATAATGCGAGAATGGAAGATCCTCTCCAACGGCCTGCCCGACTCCATCTACGTCCGCGTCTACGAGAACCGCATCGATCTCATGAGAGCAGTAATCATCGGCGCCGCGGGTACACCCTACCACGATGGACTTTTCTTCTTCGACATTGCTTTCCCGCCAAATTACCCTGCCCAGCCTCCCAAGGTTCACTACCTCTCATGCGGCTTCAAACTCAACCCCAACCTTTACCATAACGGCGAAGTTTGCCTCAGCCTCATTAACACCTGGATCGGTAAAAAGAACGAAAGGTGGGACCCATGCGGTTCAACAACCGTTTTGCAGCTCCTCGTTTCTCTCCAAGGCCTTGTCCTAAACGACAAGCCGTTTTTCAACGAAGCCGGATCCGAAATCTTCGGACGCGCTTTCTTTGAGAAGCAGGCGCATTCTTATAACTACTACGTTTTCTTGCTTAACTGTAGGACTATGCTGTTTTGGCTCCAACGGCCTCCGCGGAACTTCGAGGTATTCGTTAACGCGCACTTCCGTGACCGCGCGTGTCGGATTCTGAGGGCGTGCAATGAGTACGTGAACGGGCGCGTGAGGGTTGGGTGGTACGGTGTGAGCGACGCCGGGGAGGACGCCGGTGGCTCTCCTCGTCGCTCGCGCGTGAAGGTCTCGGCGGAATTCAAGGCATCGATGGGGAAGCTGTATCTTTGGATGGTTGCGGCGTTTCAAATGCACAGTTTTGCGTTGTGTTCGGAGCTTTTGCAATTGGAGAACAGTGATGAAAATGGTGGTTCTTCGAAGAATAAGGGACATGGTGGTGACAAAAAGTATGGGAAGATTGTTAGAAGCTGTTGGGGAGGTTTTGGAAGTTTCATGCTCGGTAGGAACCCACGGGAGGTTAACTTGATAGCCGAGAATAATTCGAAGGATCAGAACGACACCAAGCTTGGTTCGGCTGCCGCCGGTGGTGGTTTTAGGGTTAGGGTTTCCAAGAGATGTGGTATGCTTCAGGCATTCATGAATCTGCGCTCTCTCTGCTTGAGGCCATTTGGGCTCGCTGACGATAACGTCGCCGGCTCCCCCGTCGGAGTCAACAGCGGCAGCTTCAGAGGCAGCGGAAGCTTTCGAGACGGCGGCGGCGCTAGAGAAGACAATGACAGCCTTCTCTGGTCCCGCGACGTCGGAAAATATGGCTCCGGTGATTTCTCCATGGCCGTCGTGCAGGGCAACCAGGTCCTCGAAGACCAGAGCCAAATAGAGTCCGGTCCCCTCGGCACCTTCGTTGGCATCTACGACGGTCACGGAGGACCCGACGCCGCAAGATTCGTATGCGATCACCTATTTCGCCATTTTCAAGCAATATCGGCCGAGTCAAATGGAGATGTGACAACTGAGACCATTGAGAGGGCATTCCGCCAAACAGAGGAAGGGTATACTGCCCTTGTGTCAGACCTGTGGTGCACTCGGCCTCAAGCCGCAAGCGCCGGGACTTGTTGTCTGGTGGGAGTTATATTTAAGCAGACACTCTTTGTGGCAAACCTTGGAGATTCCCGTGTTGTGTTGGGCAAGAAATTTGGCATCACCGGAGATATTGCTGCAATTCAGCTCTCTACAGAACACAATGCAAATCTTGAAGCTGTGAGGCAGGAGCTTAAAGTGTTACACCCAGATGATCCCCAGATTGTGGTCCAAAAACATGGAGTATGGAGAGTCAAAGGCATTATTCAGATTTCTAGATCTATAGGTGACGTATATATGAAAGACGCAAAATTTAACCGGGAACCGCTTCCTGAAAAATTCAGACTTCCTGAACCCATGCACATGCCTATCCTGAGTGCTAATCCCGCTATTATTTCTCGTCGTCTCCAACCAAGTGATTCTTTCCTTATATTTGCATCAGATGGTTTATGGGAACAGCTGAGCAATGAAGAAGCTGTAGAAATTGTCAACAGCAATCCACACTCGGGTAGTGCCAAGATGCTTGTCACGGCTGCCCTACAGGAAGCAGCAAGAAAACGAGAGATGCGATATTCGGACCTGCGCAAGATAGACAAGAAGGTTCGACGCCATTTTCATGATGATATATCTGTTATTGTTTTATTCTTGAACCACAACCTTATATCCAAAGGCACAGTGCTAGACCCACCACTCTCAATACGAAGCGAACTCGATCACTGA 2340 0.5085 MAELKEFERFDVVSDHSDHYFSEPPAENTKKQKENRNPEASNQAARNCFSNTGSNVYKNIMREWKILSNGLPDSIYVRVYENRIDLMRAVIIGAAGTPYHDGLFFFDIAFPPNYPAQPPKVHYLSCGFKLNPNLYHNGEVCLSLINTWIGKKNERWDPCGSTTVLQLLVSLQGLVLNDKPFFNEAGSEIFGRAFFEKQAHSYNYYVFLLNCRTMLFWLQRPPRNFEVFVNAHFRDRACRILRACNEYVNGRVRVGWYGVSDAGEDAGGSPRRSRVKVSAEFKASMGKLYLWMVAAFQMHSFALCSELLQLENSDENGGSSKNKGHGGDKKYGKIVRSCWGGFGSFMLGRNPREVNLIAENNSKDQNDTKLGSAAAGGGFRVRVSKRCGMLQAFMNLRSLCLRPFGLADDNVAGSPVGVNSGSFRGSGSFRDGGGAREDNDSLLWSRDVGKYGSGDFSMAVVQGNQVLEDQSQIESGPLGTFVGIYDGHGGPDAARFVCDHLFRHFQAISAESNGDVTTETIERAFRQTEEGYTALVSDLWCTRPQAASAGTCCLVGVIFKQTLFVANLGDSRVVLGKKFGITGDIAAIQLSTEHNANLEAVRQELKVLHPDDPQIVVQKHGVWRVKGIIQISRSIGDVYMKDAKFNREPLPEKFRLPEPMHMPILSANPAIISRRLQPSDSFLIFASDGLWEQLSNEEAVEIVNSNPHSGSAKMLVTAALQEAARKREMRYSDLRKIDKKVRRHFHDDISVIVLFLNHNLISKGTVLDPPLSIRSELDH 779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151709g00003 779 SUPERFAMILY UBC-like 48 222 IPR016135 -
Stsc151709g00003 779 ProSitePatterns PPM-type phosphatase domain signature. 481 489 IPR000222 GO:0043169
Stsc151709g00003 779 PANTHER (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME 7 310 - -
Stsc151709g00003 779 Pfam Protein phosphatase 2C 479 727 IPR001932 -
Stsc151709g00003 779 SMART ubc_7 58 215 - -
Stsc151709g00003 779 Gene3D - 441 764 IPR036457 -
Stsc151709g00003 779 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 55 218 IPR000608 -
Stsc151709g00003 779 FunFam Putative ubiquitin-conjugating enzyme E2 38 1 299 - -
Stsc151709g00003 779 Gene3D Ubiquitin Conjugating Enzyme 2 262 IPR016135 -
Stsc151709g00003 779 ProSiteProfiles PPM-type phosphatase domain profile. 455 756 IPR001932 -
Stsc151709g00003 779 SMART PP2C_4 442 754 IPR001932 -
Stsc151709g00003 779 Pfam Ubiquitin-conjugating enzyme 60 180 IPR000608 -
Stsc151709g00003 779 CDD UBCc 57 188 IPR000608 -
Stsc151709g00003 779 SUPERFAMILY PP2C-like 465 757 IPR036457 -
Stsc151709g00003 779 FunFam Probable protein phosphatase 2C 42 446 764 - -
Stsc151709g00003 779 MobiDBLite consensus disorder prediction 16 37 - -
Stsc151709g00003 779 CDD PP2Cc 456 756 IPR001932 -
Stsc151709g00003 779 MobiDBLite consensus disorder prediction 16 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151709g00003 Stsc-Chr151709 13574 22411 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151709g00003 439 774 PP2C-type Phosphatase Gene Family AT3G51370 58.140 9.87e-144 426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151709g00003 K01102 - gmx:100790813 600.897