Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151705g00001 ATGATAATGGAAGAACGGTTATGCCAAAACTCATCAGATTCTGTTCATAAGTTAGGGATTGTACATGTTAAACCCTTGCGTAGTTTAGCACCAGTGTTCCCTGAATCTACGCTAGGTTCTAAATCTGGGCAGCCCCCGTGTGGATTTTCTCCATTTTTCCCCTTTGGTGTAAATCGAGATTCTCGAGCATCCCCTACTCCGGCGCCAGCTCCAGTTCCAGTTCCGGCTCCTGCGCCGGTGAGGTCATTTAAGAGTTCAGTAGTTGAAGAAGAAGTTTGGCGTGGAGCTGATGGGGATGGTTCATCAATGGAGGGGGTTAGTGGTGCTGCTAACGAGAAAAGCCGTGCCGCGCCAGATTTCTGTGGAATCAGACCACCTCCCGGTCCTATTCCAGCTCCGATTCCGTTAAGGTCCTTTAGGAGCCCTCAGGTGGAGGAAGAAGCCCTGGATGGAGGAAATGGTGATGGTTCTTCGTCGAGGGATGGGCTCGATGGTGCTGTTAATGGCCAAAATTTTGCGGCGCCACATATGCGTGGTAGCGTGCCATCTAATTCATCCATACCGGCTCCGACTCCATTACGGTCCTATAGGAGCCCCCTAGTTAAAGAAGTAAACATACGTGGACCTAATGCAGATGCTGGTTCGTCATCTAATGTGCTCAATGGTGTTGCTAGTGCCCAAAAGCGATCGGCACCAAATTCGCAAGGCAATATATCATCCCAAAAGAGGAACAAGGTAAATCGAGAATCAGATGTATTGTCTTCGCCAGTTAGTCTTAGTCTAGAAAAAAGGAATGATGCTGACCGTGAGACAGTTATTTTTGTACTTATGATATTCGATGCTCTTCGAAGAAGGCTCGGCCAACTTGAAGAGGCCAAGGAATTGAACACGACTGGTGTCATCAAGCGTGCAGATTTAAGGGCTAGCAATACTATGACACTCAAAGGGGTTCGGACGAACTTGAGAAAGAGAATGGGAGTAGTTCCTGGGATTGAGATTGGTGACATTTTCTACTTTCGTATGGAGTTATGTCTTGTGGGCTTACATGGTCAGACAATGAGTGGAATCGACTACGCGACTGTAAAATGTGAATCTCAGGAGGAACCTTTGGCTCTAAGCATTGTTTCTTCTGGAGAATATGATGATGATACTGAGGATAGCGATGTTTTGGTATATAGCGGTCAGGGTGACTTCCACAAGAAAGATAAGCATGATCAGAAGCTTCAAAGGGGTAATCTTGCTCTGGATAGAAGTTCACNNNNNNNNNNGCATAATGAAGTAAGAGTCATCCGTGGACTGAAAGATGCTACTAACAAAAGCACAAAAATATATGTTTATGATGGTCTATATAAAATCCAAGATTCTTGGATAGAAAGGGGGAAATCTGGTGGCGGCATTTTTAAGTATAAGTTCGTGAGATTGCCTCAACAGCCCAGTGCTTTTGCTGTTTGGAAATCAGTTCAAAAATGGAAAGAAGGCACCCTTTCAAGGAGTGGTCTTATTATTAAAGACCTCTCATCAGGAAACGAGAGTATTCCTGTATCACTTGTTAATGACGTTGACGACGCAAAGGGTCCTGGTTTTTTCACTTATTTTAATTCTCTCAAAAACGCAAAACCATTTGGTTCAATTATGTCTTCTCATGGATGTAACTGTAACAAAGCATGTGTCCCGGGAGATTCAAGTTGCTCATGCATTCAAAGAAATGTAGGTGATTTTCCATATATTGCAAATGGTGTTCTAGTTAGTCGGAAGCCATTGGTTCATGAATGTGGCTCCATGTGTCATTGTCTTCCGAATTGCAAAAATCGAGCGTCCCAGTCTGGTTTAAAGCACTACATGGAAGTTTTTAAAACAAAGGATAGAGGGTGGGGTCTTCGATCATTGGATCCTATTCGTGCTGGTACTTTTATTTGTGAGTATGCAGGAGAAGTTGTTGACGGAGCCAAGTTAAGTGTGAATAGGAGGGAAGAAGATAATGAGTACATTTTTGATACAAGCCGAATCTTTGAACCATTCAAGTGGAATTATGAACCTAGCTTACTGGAAGAAGGGACTCCAAGGAATGGCAGTGAAGAATATGATATACAATCCCCTCTAATTATAAGCGCCAAAGATGTTGGTAATGTGGCTAGGTTCATGAATCATAGTTGCTCCCCAAATGTTTTCTGGCAGCCAGTCGTATATCATGAAAACAATCGATCCTTCCTTCACATTGCATTTTTTGCCCTAAGACACATTCCTCCAATGACAGAGTTAACGTATGATTATGGAGTTACCCGCTCTGGTCATGCTGAAGGTAGCCGTCCATTCAAGGGAAGGGAGAAATGCTTGTGTGGATCACCAAAATGCCGTGGTTCTTTTGGTTGA 2370 0.4354 MIMEERLCQNSSDSVHKLGIVHVKPLRSLAPVFPESTLGSKSGQPPCGFSPFFPFGVNRDSRASPTPAPAPVPVPAPAPVRSFKSSVVEEEVWRGADGDGSSMEGVSGAANEKSRAAPDFCGIRPPPGPIPAPIPLRSFRSPQVEEEALDGGNGDGSSSRDGLDGAVNGQNFAAPHMRGSVPSNSSIPAPTPLRSYRSPLVKEVNIRGPNADAGSSSNVLNGVASAQKRSAPNSQGNISSQKRNKVNRESDVLSSPVSLSLEKRNDADRETVIFVLMIFDALRRRLGQLEEAKELNTTGVIKRADLRASNTMTLKGVRTNLRKRMGVVPGIEIGDIFYFRMELCLVGLHGQTMSGIDYATVKCESQEEPLALSIVSSGEYDDDTEDSDVLVYSGQGDFHKKDKHDQKLQRGNLALDRSSXXXXHNEVRVIRGLKDATNKSTKIYVYDGLYKIQDSWIERGKSGGGIFKYKFVRLPQQPSAFAVWKSVQKWKEGTLSRSGLIIKDLSSGNESIPVSLVNDVDDAKGPGFFTYFNSLKNAKPFGSIMSSHGCNCNKACVPGDSSCSCIQRNVGDFPYIANGVLVSRKPLVHECGSMCHCLPNCKNRASQSGLKHYMEVFKTKDRGWGLRSLDPIRAGTFICEYAGEVVDGAKLSVNRREEDNEYIFDTSRIFEPFKWNYEPSLLEEGTPRNGSEEYDIQSPLIISAKDVGNVARFMNHSCSPNVFWQPVVYHENNRSFLHIAFFALRHIPPMTELTYDYGVTRSGHAEGSRPFKGREKCLCGSPKCRGSFG 789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151705g00001 789 SUPERFAMILY PUA domain-like 308 495 IPR015947 -
Stsc151705g00001 789 Gene3D SET domain 495 788 IPR046341 -
Stsc151705g00001 789 MobiDBLite consensus disorder prediction 122 136 - -
Stsc151705g00001 789 SMART set_7 612 764 IPR001214 GO:0005515
Stsc151705g00001 789 Pfam SAD/SRA domain 325 477 IPR003105 -
Stsc151705g00001 789 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 193 782 - -
Stsc151705g00001 789 Pfam SET domain 623 758 IPR001214 GO:0005515
Stsc151705g00001 789 ProSiteProfiles Pre-SET domain profile. 548 609 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Stsc151705g00001 789 ProSiteProfiles SET domain profile. 612 758 IPR001214 GO:0005515
Stsc151705g00001 789 Pfam Pre-SET motif 506 604 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Stsc151705g00001 789 SUPERFAMILY SET domain 511 786 IPR046341 -
Stsc151705g00001 789 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 177 789 IPR025794 GO:0016571
Stsc151705g00001 789 ProSiteProfiles Post-SET domain profile. 773 789 IPR003616 -
Stsc151705g00001 789 Gene3D - 308 494 IPR036987 -
Stsc151705g00001 789 ProSiteProfiles YDG domain profile. 326 473 IPR003105 -
Stsc151705g00001 789 SMART preset_2 502 596 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Stsc151705g00001 789 SMART G9a_1 321 477 IPR003105 -
Stsc151705g00001 789 MobiDBLite consensus disorder prediction 116 251 - -
Stsc151705g00001 789 FunFam Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5 309 492 - -
Stsc151705g00001 789 MobiDBLite consensus disorder prediction 210 243 - -
Stsc151705g00001 789 MobiDBLite consensus disorder prediction 177 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151705g00001 Stsc-Chr151705 1872 6125 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151705g00001 191 789 Su(var)3-9 homologs AT5G04940 53.577 0.0 643
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Stsc151705g00001 SAD_SRA 2.1e-43 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151705g00001 K24405 - gmx:100800651 862.833