LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc151698g00002	ATGGGAAGCGGCGTGGAGATGGTGACTTCAACCTCCAAGGGTTATTATTTTCTTGTTTGTGCAATTTTGGTGCTTGATTTGGTGCTTAAGGTCTCTGGCAATGCTGAAGGTGATGCCCTAAATGCATTGAAGAGCAACTTACAAGATCCTAACAATGTTCTACAAAGCTGGGATGCCACCCTTGTCAATCCCTGCACATGGTTTCATGTGACATGCAATAGTGATAATAGTGTGACCCGTGTTGATCTTGGAAATGCAGATCTGTCGGGTACACTGGTTCCAAACCTTGGTCAACTAACAAATTTACAGTACCTGGAACTTTACAGTAATAATATAACTGGAAAAATCCCAGATGAGCTTGGAAATTTGACAAACTTGGTGAGCTTGGATCTCTACTTGAACACGCTAAATGGTCCAATACCAGCTACATTGGGCAAGCTTAGTAAACTACGATTCCTGCGTCTCAACAATAACACCTTGTCAGGAGGCATTCCCATGTCATTGACTGGCATTAATTCACTGCAAGTTCTTGATCTTTCAAACAACCAGCTAAAAGGGACTGTGCCAATCAATGGTTCATTTTCGTTGTTTACTCCGATCAGTTATCAAAATAATCCTGGCTTGATACAACCAAAGAATCTTCCTTCTGCACCGGTATCTCCTCCATCGGCACCTTCTTCAGGTAACAGTGCTACCGGAGCTATAGCTGGAGGAGTTGCTGCAGGTGCTGCTTTGTTGTTTGCAGCCCCTGCAATCGCACTTGCCTATTGGCGAAGAAGGAAGCCTCAGGATCATTTCTTTGATGTCCCTGCTGAGGAGGATCCTGAAGTTCACCTAGGCCAGCTTAAAAGGTTTTCTCTGCGTGAGCTGCAAGTTGCGACAGATAACTTTAGTAACAAACACATTCTTGGTAGAGGTGGATTTGGGAAGGTTTATAAAGGGCGTTTAGCTGATGGTACTCTTGTAGCTGTAAAAAGGCTGAAAGAGGAGCGCACACAGGGTGGGGAGCTGCAATTCCAAACTGAAGTGGAAATGATCAGCATGGCCGTGCATCGCAATTTGCTTCGGCTCCGTGGTTTCTGCATGACACCTACTGAACGGTTGCTTGTGTATCCCTTCATGGTCAATGGAAGTGTGGCATCATGTTTACGAGAACGTCATGAATCTCAGCCGCCACTTGACTGGCCAATACGAAAGCGTATTGCATTAGGAGCTGCTAGGGGCCTGGCTTATTTGCATGACCATTGTGACCCTAAGATTATTCATCGTGATGTCAAAGCTGCAAATATATTGTTGGATGAAGAATTTGAAGCAGTTGTCGGAGATTTTGGCTTAGCAAAACTGATGGATTACAAAGACACTCATGTTACTACTGCTGTACGCGGTACAATTGGGCATATAGCACCAGAGTACCTCTCAACTGGGAAGTCGTCAGAGAAGACTGATGTTTTTGGATACGGTGTGATGCTTCTTGAACTAATAACAGGGCAGAGGGCTTTTGATCTAGCTCGACTTGCCAATGATGATGATGTCATGTTGCTTGATTGGGTTAAAGGGCTTCTTAAAGACAAGAAGTTGGAAACACTGGTCGATGCGGATCTACAGGGCAATTATAACGATGAGGAGGTGGAGCAGTTAATCCAAGTAGCGTTGCTATGCACACAAGGGTCCCCTATGGAAAGACCTAAGATGTCTGAGGTGGTTAGAATGCTAGAAGGCGACGGTTTGGCTGAAAAATGGGAGCAGTGGCAGAAAGAGGAGATGTTCCGGCAAGATTTTAACCACATCCATCACCCCAATGCAAATTGGATAGTAGACTCAACTTCACATATCCAAGCAGATGAACTATCTGGTCCTAGATGA	1863	0.4477	MGSGVEMVTSTSKGYYFLVCAILVLDLVLKVSGNAEGDALNALKSNLQDPNNVLQSWDATLVNPCTWFHVTCNSDNSVTRVDLGNADLSGTLVPNLGQLTNLQYLELYSNNITGKIPDELGNLTNLVSLDLYLNTLNGPIPATLGKLSKLRFLRLNNNTLSGGIPMSLTGINSLQVLDLSNNQLKGTVPINGSFSLFTPISYQNNPGLIQPKNLPSAPVSPPSAPSSGNSATGAIAGGVAAGAALLFAAPAIALAYWRRRKPQDHFFDVPAEEDPEVHLGQLKRFSLRELQVATDNFSNKHILGRGGFGKVYKGRLADGTLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLRERHESQPPLDWPIRKRIALGAARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKDKKLETLVDADLQGNYNDEEVEQLIQVALLCTQGSPMERPKMSEVVRMLEGDGLAEKWEQWQKEEMFRQDFNHIHHPNANWIVDSTSHIQADELSGPR	620

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc151698g00002	620	Pfam	Protein kinase domain	298	569	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc151698g00002	620	Gene3D	Phosphorylase Kinase; domain 1	266	373	-	-
	Stsc151698g00002	620	Pfam	Leucine Rich Repeat	101	123	IPR001611	GO:0005515
	Stsc151698g00002	620	ProSitePatterns	Protein kinases ATP-binding region signature.	303	325	IPR017441	GO:0005524
	Stsc151698g00002	620	FunFam	Somatic embryogenesis receptor kinase 1	266	373	-	-
	Stsc151698g00002	620	PANTHER	SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1	17	582	-	-
	Stsc151698g00002	620	Pfam	Leucine rich repeat N-terminal domain	34	73	IPR013210	-
	Stsc151698g00002	620	SUPERFAMILY	Protein kinase-like (PK-like)	276	572	IPR011009	-
	Stsc151698g00002	620	Gene3D	Ribonuclease Inhibitor	33	216	IPR032675	-
	Stsc151698g00002	620	ProSiteProfiles	Protein kinase domain profile.	297	581	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc151698g00002	620	SMART	serkin_6	297	571	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc151698g00002	620	Gene3D	Transferase(Phosphotransferase) domain 1	374	591	-	-
	Stsc151698g00002	620	FunFam	Somatic embryogenesis receptor kinase 1	32	219	-	-
	Stsc151698g00002	620	MobiDBLite	consensus disorder prediction	211	230	-	-
	Stsc151698g00002	620	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	420	432	IPR008271	GO:0004672\|GO:0006468
	Stsc151698g00002	620	FunFam	Somatic embryogenesis receptor-like kinase 1	374	591	-	-
	Stsc151698g00002	620	CDD	STK_BAK1_like	303	574	-	-
	Stsc151698g00002	620	SUPERFAMILY	L domain-like	36	200	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc151698g00002	Stsc-Chr151698	6708	12252	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc151698g00002	22	620	Receptor kinase-like Gene Family	AT4G33430	78.891	0.0	983

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-II	Stsc151698g00002		Pkinase	2.7e-44	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc151698g00002	K13416		-	gmx:100800522	1088.56