Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151696g00006 ATGGGACTAGGCAAGACTTTACAAGCTATTGCTTTCCTAAGCTATCTGAAAGTGTACCAGTTATCACCTGGGCCATTTTTGGTTATATGTCCTCTAAGCGTGACAGATGGTTGGGTGTCAGAGATAGTGAAATTTGCCCCAAAGCTAGATGTCTTTAAATATGTTGGTGATAAAGAATCCAGGCGCAATCTGCGTATGAAAATACATGAACATGTAAAAGGGCAGGCATCAACAGATGTCAGTTCATTTTACTTCCATGAGCTCACTGAATCTCAGTGA 279 0.4086 MGLGKTLQAIAFLSYLKVYQLSPGPFLVICPLSVTDGWVSEIVKFAPKLDVFKYVGDKESRRNLRMKIHEHVKGQASTDVSSFYFHELTESQ 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151696g00006 92 Coils Coil 88 92 - -
Stsc151696g00006 92 Pfam SNF2-related domain 1 67 IPR000330 GO:0005524|GO:0140658
Stsc151696g00006 92 Gene3D - 1 90 IPR038718 -
Stsc151696g00006 92 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 69 IPR027417 -
Stsc151696g00006 92 PANTHER SNF2/RAD54 HELICASE FAMILY 1 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151696g00006 Stsc-Chr151696 27227 27657 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Stsc151696g00006 SNF2_N 3.3e-12 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151696g00006 K20092 - gmx:100797182 137.887