Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151696g00005 ATGACTGGCACGCCTATTCAGAATAATCTCTCTGAGTTGTGGTCACTGATGTATTTCTGTATGCCAGCTGTCTTTGGTATGCTGGATCAGTTCCTTTCCACGTTCAAGGATATCAATGACCTTACTTCAGAAGTTCATAATCCACGGGTAAAAGAGCGACTTAAAATTTTGAAAAGATTATTGGGAGCCTTTATGCTTCGACGTACCAAATCAAAGCTTGTTGAGAGTGGAAATCTAGTGTTGCCACCTCTCACTGAGACAACCATGTAG 270 0.4148 MTGTPIQNNLSELWSLMYFCMPAVFGMLDQFLSTFKDINDLTSEVHNPRVKERLKILKRLLGAFMLRRTKSKLVESGNLVLPPLTETTM 89
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151696g00005 89 Pfam SNF2-related domain 1 87 IPR000330 GO:0005524|GO:0140658
Stsc151696g00005 89 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 68 IPR027417 -
Stsc151696g00005 89 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 1 87 - -
Stsc151696g00005 89 Gene3D - 1 81 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151696g00005 Stsc-Chr151696 25796 26460 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151696g00005 1 83 RAD5 or RAD16-like Gene Family AT5G22750 38.824 3.50e-08 47.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Stsc151696g00005 SNF2_N 1.7e-11 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151696g00005 K20092 - lja:Lj0g3v0149049.2 147.132