Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151696g00004 ATGGAAGATGGTACCACTCCTTGTAGGCCATGTCATGTTTATATGTCTTGGGTTATACAACTTAGAAAAGCATGCAGCCATCCTTATCTCTTTCCAGGTATCGAGCCTGAACCTTTTGAAGAAGGTGAACATCTTGTTCAGGCAGGTGGCAAGCTTCTGATTCTGGACCAGCTTCTAAAGAAGCTATACTCTTCTGGACACCGCGTTCTTCTTTTTGCACAGATGACCCATACACTTGATATTTTACAGGATTTTCTGGAGTTAAGGAAGTATTCCTACGAGCGTCTTGATGGTTCAGTTAGGGCTGAGGAGCGTTTTGCTGCAATAAGAAGTTTCAGCAGCTCATCAGCTAATATGGGCTTAAATTCTGATCCTGAGCATCATGGAGCTTTTGTTTTCATGATTTCAACAAGAGCTGGTGGAGTTGGCTTGAATCTTGTGGCTGCTGATACTATATTCAGTAATCCCTTGACGGAAAAGCTCATAGGGCAGAAAGAACATAAAAATCGAGAAGTCACAGAGTCAAGTCACGGAGTCGCAGGGATGTCAAAACAGGAAATGCGTGATCGCATCGCCTTAATAGTTTAG 588 0.4303 MEDGTTPCRPCHVYMSWVIQLRKACSHPYLFPGIEPEPFEEGEHLVQAGGKLLILDQLLKKLYSSGHRVLLFAQMTHTLDILQDFLELRKYSYERLDGSVRAEERFAAIRSFSSSSANMGLNSDPEHHGAFVFMISTRAGGVGLNLVAADTIFSNPLTEKLIGQKEHKNREVTESSHGVAGMSKQEMRDRIALIV 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151696g00004 195 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 54 195 IPR001650 -
Stsc151696g00004 195 Gene3D - 10 155 IPR027417 -
Stsc151696g00004 195 Pfam Helicase conserved C-terminal domain 51 153 IPR001650 -
Stsc151696g00004 195 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 14 153 IPR027417 -
Stsc151696g00004 195 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1-LIKE 17 152 IPR031053 GO:0003678|GO:0006281|GO:0006338
Stsc151696g00004 195 CDD SF2_C_SNF 43 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151696g00004 Stsc-Chr151696 17331 19695 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151696g00004 51 187 RAD5 or RAD16-like Gene Family AT5G22750 31.724 1.65e-12 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151696g00004 K20092 - gmx:100797182 216.468