Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151688g00002 ATGGATTCTTCCTCGTCTTCTTCACCATCACCGCCTCTTTCCCTTCCTTTCTCTCTCTCCAACCACTTCTCTCCCTCTTCTCATCACTCTTCTTCCTCTCCTCTCTCCCTCTTCCACCCCTCCTTCACCTATTCCACCCCCACTCCTTCTCTCACCCTTACACCAACCGCTAAACATATCCATGCATCGCCGGAGCCAACTGACGCCGCCGCCGCTGGACGACCAACTAACCTCTCCATATTCACCGGGGGGCCAAAGTTCGAGGATTTCCTTGGCGCCTCCTCAGCAACTGCAGTAATCGCCACAGTATGTGCACCGCCTCAGCAGCAGCTTGCTCAGCTGTCCACCGACAACAACGGCGTCGTATACGACAGTGAACTGAAGACCACGATAGCAGCGTGCTTCCCTGAAGCAGGAAGTGGCGTTGAAGTAGCTATTCAGAAGGCTTCTCCAAAGAAAAGTGTTGACACCTTCGGACAACGCACCTCCATCTACCGCGGAGTCACAAGACATAGATGGACTGGGAGATATGAAGCTCATCTATGGGATAACAGCTGCAGAAGGGAAGGACAAAGTAGGAAAGGAAGACAAGTTTATTTGGGTGGCTATGACAAGGAAGAGAAAGCGGCCAGAGCTTATGATCTCGCTGCTCTCAAGTACTGGGGTCCAACCACCACCACCAACTTTCCGGTTTCCAACTATGAGAAGGAGCTAGAGGAAATGAAGAACATGACAAGGCAAGAGTTTGTTGCTTCTCTTAGAAGGAAGAGCAGTGGGTTCTCTAGGGGGGCATCTATATACAGAGGAGTGACCAGGCATCACCAGCATGGGCGATGGCAGGCAAGAATAGGCAGAGTTGCCGGAAACAAAGACCTCTACCTTGGCACTTTCAGCACGCAAGAAGAAGCTGCAGAGGCGTACGACATCGCAGCAATCAAATTCAGAGGACTGAATGCGGTTACCAACTTTGACATGAGTCGCTACGATGTGAAGAGCATTGCTAACAGCACTCTTCCCATCGGTGGATTATCAACAAAGAACAACAAGAACTCCAACAATGATTCTCTTTCAAATCACTCTGATGACCGTGACACTCATCAACCACCTTCAACCTCCACCCTCAGCTTCGCTGTTCCCATCAAACAGGACCCTTCACCTGATTACTGGTCCATCCTTGGCTACTCCAATAATAACACTACCACCACAGTAATTGCACCACCACCATCACCACCCTCTTTGATGGACTTCAATTCTGCTCCTTCTACAACGGAGGCATACTTCAATGCAGGAGGGATCTACGTGAGCCAGCAGCAGAGTGGTGGTTCATCATCATCATCTTCGGGTGGTGGATCTTCTTCAATCCCAATGGCAACACCAATATTTTCCTTAAATAGTAACACTAGTTATGAGAATTGGATTGGGCCAACACTGCACACATTCCAATCTCATGCAAAACCAAGTCTCTTTCAAACGCCAATATTCGGAATGGAATGA 1494 0.4933 MDSSSSSSPSPPLSLPFSLSNHFSPSSHHSSSSPLSLFHPSFTYSTPTPSLTLTPTAKHIHASPEPTDAAAAGRPTNLSIFTGGPKFEDFLGASSATAVIATVCAPPQQQLAQLSTDNNGVVYDSELKTTIAACFPEAGSGVEVAIQKASPKKSVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAARAYDLAALKYWGPTTTTNFPVSNYEKELEEMKNMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKSIANSTLPIGGLSTKNNKNSNNDSLSNHSDDRDTHQPPSTSTLSFAVPIKQDPSPDYWSILGYSNNNTTTTVIAPPPSPPSLMDFNSAPSTTEAYFNAGGIYVSQQQSGGSSSSSSGGGSSSIPMATPIFSLNSNTSYENWIGPTLHTFQSHAKPSLFQTPIFGME 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151688g00002 497 ProSiteProfiles AP2/ERF domain profile. 266 324 IPR001471 GO:0003700|GO:0006355
Stsc151688g00002 497 FunFam AP2-like ethylene-responsive transcription factor ANT 163 232 - -
Stsc151688g00002 497 Gene3D AP2/ERF domain 266 326 IPR036955 GO:0003700|GO:0006355
Stsc151688g00002 497 Gene3D AP2/ERF domain 164 232 IPR036955 GO:0003700|GO:0006355
Stsc151688g00002 497 MobiDBLite consensus disorder prediction 339 355 - -
Stsc151688g00002 497 ProSiteProfiles AP2/ERF domain profile. 164 230 IPR001471 GO:0003700|GO:0006355
Stsc151688g00002 497 MobiDBLite consensus disorder prediction 339 379 - -
Stsc151688g00002 497 CDD AP2 265 326 IPR001471 GO:0003700|GO:0006355
Stsc151688g00002 497 SUPERFAMILY DNA-binding domain 163 232 IPR016177 GO:0003677
Stsc151688g00002 497 CDD AP2 163 232 IPR001471 GO:0003700|GO:0006355
Stsc151688g00002 497 FunFam AP2-like ethylene-responsive transcription factor 265 326 - -
Stsc151688g00002 497 PRINTS Ethylene responsive element binding protein signature 306 326 IPR001471 GO:0003700|GO:0006355
Stsc151688g00002 497 PRINTS Ethylene responsive element binding protein signature 165 176 IPR001471 GO:0003700|GO:0006355
Stsc151688g00002 497 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 116 420 - -
Stsc151688g00002 497 Pfam AP2 domain 266 316 IPR001471 GO:0003700|GO:0006355
Stsc151688g00002 497 Pfam AP2 domain 164 222 IPR001471 GO:0003700|GO:0006355
Stsc151688g00002 497 SUPERFAMILY DNA-binding domain 265 326 IPR016177 GO:0003677
Stsc151688g00002 497 SMART rav1_2 266 330 IPR001471 GO:0003700|GO:0006355
Stsc151688g00002 497 SMART rav1_2 164 236 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151688g00002 Stsc-Chr151688 11277 14460 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151688g00002 122 497 AP2-EREBP Transcription Factor Family AT5G57390 56.161 1.87e-142 415
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Stsc151688g00002 AP2 3.7e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151688g00002 K09285 - gmx:100797828 627.861