Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151685g00004 ATGGCGAAGACAGATGCAAAAGAGCCCTTGCTGTCAAGATCAGAGGATCTTGAAGATCAAAAGTTCAGAAGGCAGTTAAGGAAGAGAAAGTTGCGCCGTGCTAGAAGTGCACCTTGCCACGATGCTGATTTCGCAGACACGAATGGCAACATACCAGTGCCAAGATCTGAGTCAATATTTGGGAATATACATCCAAGCTTTAGAAAAGTTGCTATGTACCTTATATTGTATTTAGGAATAGGTGCTATTGTATTCTACCTTGTTGGGAACCAGATCAAGGGGCTGAAAACGGACGGGGTTCTTGATGCTATATACTTCACAGTTGTGACAATGACAACAGTTGGTTATGGAGATATTGTTCCGAATAGCAACCTTACAAAGCTACTCGCATGCGCTTTTGTTTTCTCCGGAATGGCATTGGTTGGACTAATCCTAGGCCAAGCAGCAGATTACTTGGTTGAGAAGCAAGAAGTTTTGCTAGTTAAAGCTATGCACATGCACCAACATGTTGGTGAAAGAGAGATTCTAAAGGAGGTTGAGGTGAACAAAGCAAGATACAAATTCCTCTTGGCCTTTTCCCTTCTCTTGATTATGATCATAGTGGGGACGGTTTTCTTGGTCGCGGTTGAGAAATTGCAAGTCATCGACGCGTTTTACTGCGTTTGTTCTACTCTTACAACCCTTGGATATGGTGATAAGAGTTTCTCAACTGAAGCAGGTAGAGTATTTGCTGTGTTTTGGATATTGGCAGGTACAATTTCTTTGGCTCAGGTGTTCCTCTACATTGCTGAGCTTAACACCGAAAGCCGACAAAAGACAATCGTGAAGTGGGTTCTTTCGAAGAAGATGACCAATTTGGACTTGGAGGCTGCAGATCTTGATGATGATGGCACTGTTGGGGCTGCTGAATTCGTTGTTTATAAGCTCAAAGAGATGGGGAAGATTAGTCAAGAAGATATATCAGTTTTGTTGCATGAGTTTGAAGAACTTGATGTTGATGAGTCTGGTACACTTTCAGTTTCTGATTTAGCATTTGCTCAGTCATCTTAG 1050 0.4219 MAKTDAKEPLLSRSEDLEDQKFRRQLRKRKLRRARSAPCHDADFADTNGNIPVPRSESIFGNIHPSFRKVAMYLILYLGIGAIVFYLVGNQIKGLKTDGVLDAIYFTVVTMTTVGYGDIVPNSNLTKLLACAFVFSGMALVGLILGQAADYLVEKQEVLLVKAMHMHQHVGEREILKEVEVNKARYKFLLAFSLLLIMIIVGTVFLVAVEKLQVIDAFYCVCSTLTTLGYGDKSFSTEAGRVFAVFWILAGTISLAQVFLYIAELNTESRQKTIVKWVLSKKMTNLDLEAADLDDDGTVGAAEFVVYKLKEMGKISQEDISVLLHEFEELDVDESGTLSVSDLAFAQSS 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151685g00004 349 SUPERFAMILY EF-hand 251 345 IPR011992 -
Stsc151685g00004 349 SUPERFAMILY Voltage-gated potassium channels 64 170 - -
Stsc151685g00004 349 PRINTS Two pore domain K+ channel signature 223 251 IPR003280 GO:0005267|GO:0016020|GO:0071805
Stsc151685g00004 349 PRINTS Two pore domain K+ channel signature 297 306 IPR003280 GO:0005267|GO:0016020|GO:0071805
Stsc151685g00004 349 FunFam Two-pore potassium channel 1 168 276 - -
Stsc151685g00004 349 ProSitePatterns EF-hand calcium-binding domain. 331 343 IPR018247 -
Stsc151685g00004 349 ProSitePatterns EF-hand calcium-binding domain. 292 304 IPR018247 -
Stsc151685g00004 349 Gene3D - 168 279 - -
Stsc151685g00004 349 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 73 321 IPR003280 GO:0005267|GO:0016020|GO:0071805
Stsc151685g00004 349 Gene3D - 64 158 - -
Stsc151685g00004 349 Pfam Ion channel 73 153 IPR013099 -
Stsc151685g00004 349 Pfam Ion channel 194 265 IPR013099 -
Stsc151685g00004 349 SUPERFAMILY Voltage-gated potassium channels 181 281 - -
Stsc151685g00004 349 FunFam Calcium-activated outward-rectifying potassium channel 1 64 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151685g00004 Stsc-Chr151685 12611 15041 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151685g00004 52 349 Ion Channels AT5G55630 63.758 2.66e-143 408
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151685g00004 K05389 - gmx:100777388 496.508