Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151685g00003 ATGGCGAACACGGAAGCAACAGAGCCCTTGCTGTTAGGATCAGAGGATCCTGAAGCTCAAAAGTTAAGAAGGCAGTTAAAGAATAGAAGGTTGCGCCGCGCCAGAAGCGCACCTTGCAATATCATTGGTGATTCCCCAGACACGAATTGCAATATACCAGAGCCAAGATCTGAGTCACTATTTGGGAATATACATTCAAGCTTTAGAAAAGTTGCTATGTACTACCTTATATTGTATTTAGGAATAGGTTCTGTTGTATTCTACCTTGTTAGGGACCAGTTGAAGGGGCTGAAAACAAATGGGGTTCTTGATGCTATATACTTCACAGTTGTAACAATGACAACAGTTGGTTATGGAGATATTGTTCCGGATAGTAACCTTACAAAGCTACTTGCGTGCGCTTTGGTTTTCTCTGTAATGCCATTGGTTGGACTAATCCTAGGCAAAGCAGCAGATTACTTGGCTGAGAAGCAACAAGTTTATCTAGTTAAAGCTATGCACAAGATGCACCAACAAGTTGGTCAAAGAGCAAGATACAAATTCCTTTTGGCCTTTTTCCTTCTCTTGATTATGATCATAGTAGGGACGGTTTTCTTGGTCGCGGTTGAGAAATTGGAAGTCGTCGATGCGCTTTACTGCGTTTGTTCTACTCTTACAACACTTGGATATGGTGGTAAGAGTTTCTCAACTGAAGCAGGAAGAATATTTGCAGTGTTTTGGATATTGGCAGGTACAATTTCTTTGGCTCTGGTGTTCCTCTACATTGCTGAGCTTAACACTGAAAGCAGAGAAAAGGCAATTGTGAAGTTGGTTCTTTCAAGGAAGATGACCATTTTGGACTTGGAGGAAGCAGATCTTGATGGTGATGGCAAAGTTGGGGCTGCTGAGTTCATTATTTATAAGCTTAAAGATATGGGGAAGATTAGTGAAGAAGCTATATCACTTTTGATGCAGGAGTTTGAAGAACTTGATGTTGATCAGGATGGTATACTCTCAGTTTCTGATTTAACAGGTCAGGTTGGAAATATCTAG 1032 0.4089 MANTEATEPLLLGSEDPEAQKLRRQLKNRRLRRARSAPCNIIGDSPDTNCNIPEPRSESLFGNIHSSFRKVAMYYLILYLGIGSVVFYLVRDQLKGLKTNGVLDAIYFTVVTMTTVGYGDIVPDSNLTKLLACALVFSVMPLVGLILGKAADYLAEKQQVYLVKAMHKMHQQVGQRARYKFLLAFFLLLIMIIVGTVFLVAVEKLEVVDALYCVCSTLTTLGYGGKSFSTEAGRIFAVFWILAGTISLALVFLYIAELNTESREKAIVKLVLSRKMTILDLEEADLDGDGKVGAAEFIIYKLKDMGKISEEAISLLMQEFEELDVDQDGILSVSDLTGQVGNI 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151685g00003 343 Pfam EF hand 318 336 IPR002048 GO:0005509
Stsc151685g00003 343 Pfam EF hand 281 297 IPR002048 GO:0005509
Stsc151685g00003 343 SUPERFAMILY Voltage-gated potassium channels 174 279 - -
Stsc151685g00003 343 Gene3D - 161 275 - -
Stsc151685g00003 343 Pfam Ion channel 75 155 IPR013099 -
Stsc151685g00003 343 Pfam Ion channel 187 259 IPR013099 -
Stsc151685g00003 343 ProSiteProfiles EF-hand calcium-binding domain profile. 311 343 IPR002048 GO:0005509
Stsc151685g00003 343 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 69 314 IPR003280 GO:0005267|GO:0016020|GO:0071805
Stsc151685g00003 343 SUPERFAMILY Voltage-gated potassium channels 72 164 - -
Stsc151685g00003 343 Gene3D - 276 341 - -
Stsc151685g00003 343 SUPERFAMILY EF-hand 281 337 IPR011992 -
Stsc151685g00003 343 ProSitePatterns EF-hand calcium-binding domain. 324 336 IPR018247 -
Stsc151685g00003 343 ProSitePatterns EF-hand calcium-binding domain. 285 297 IPR018247 -
Stsc151685g00003 343 Gene3D - 63 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151685g00003 Stsc-Chr151685 10637 11878 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151685g00003 53 336 Ion Channels AT5G55630 56.803 7.80e-116 338
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151685g00003 K05389 - gmx:100777388 413.69