Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151685g00002 ATGGCGAACACACAAGCAACAGAGCCCTTGCTGTCAAGATCAGAGGATCTTGAAGCTCAAAACTTCAGAAGGCAGTTAAAGAAGAGAAGGTTGCGCCGTGCTAGAAATGCACCTTGCAACGATACTGATTCCCCAGACACGAATGGCAATATACCAGATGAAGGGAATATGTATCTAAATTTTAGAAAAGTTGCTATGTATCTTATATTGTATATAGGAATAGGTACTCTTGTATTCTACCTTGTTAGGAACCAGATGAAGGGGCTGAAAATAAATGCGGTTCTTGATGCTATATACTTCACAGTTGCAACTCTAACCACAGCTGGTTATGGAGATATTGTTCCGAATAGCAACCTTACAAAGCTACTTGCGTGCGCTTTTGTTTTCTCCAGAATGGCATTCGTTGCACTGATCCTAGAGAAAGCAGCAGATTACTTGGTTGAGAAGCAACAAGTTCTTCTAGTTAAAGCTATGCACCAGCACCAAGATGTTAGTCAAAGAGAAATTCTAATTGAGGCTAGGGTGAACAAAGCAAGATACAAATTACGTTTCGCCTTTTTCCTTCTCTTGATTATAATCATAGTGGGGACATTTTTCTTGGTCGTGGTTGAGAAATTTACAGTCATGGAAGCGTTTTACTGCGTTTGTTCTACTCTAACTCTGGGATATGATGGTGAGAGTTTCTCAAGTGTAGCAGGTAGAATATTTGCTGTGTTTTGGATATTGGCAGGTACAATGTCTTTGGGTCAGGTGTTCCTCTACATTGCTGATCTTGACACTGAAAGCCAACAAAAGGCAATTGTAAAGTGGGCTCTTTCAAGGAAGATGACCAATTTGGACTTGGAGGCTGCAGATCTTGATGATGATGGCACTGTTGGGGCTGCTGAATTCGTTATTTATAAGCTCAAAGAGATGGGGAAGATTGGTCAAGAAGATATATCAGTTTTGTTGCAGGAGTTTGAAGAACTCGATGTTGATGAGTCTGGTACACTTTCAGTTTCTGATTTAGCATTTGCTCAGTCATCTTAG 1029 0.4052 MANTQATEPLLSRSEDLEAQNFRRQLKKRRLRRARNAPCNDTDSPDTNGNIPDEGNMYLNFRKVAMYLILYIGIGTLVFYLVRNQMKGLKINAVLDAIYFTVATLTTAGYGDIVPNSNLTKLLACAFVFSRMAFVALILEKAADYLVEKQQVLLVKAMHQHQDVSQREILIEARVNKARYKLRFAFFLLLIIIIVGTFFLVVVEKFTVMEAFYCVCSTLTLGYDGESFSSVAGRIFAVFWILAGTMSLGQVFLYIADLDTESQQKAIVKWALSRKMTNLDLEAADLDDDGTVGAAEFVIYKLKEMGKIGQEDISVLLQEFEELDVDESGTLSVSDLAFAQSS 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151685g00002 342 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 66 314 IPR003280 GO:0005267|GO:0016020|GO:0071805
Stsc151685g00002 342 Gene3D - 177 273 - -
Stsc151685g00002 342 Gene3D - 57 152 - -
Stsc151685g00002 342 ProSitePatterns EF-hand calcium-binding domain. 324 336 IPR018247 -
Stsc151685g00002 342 ProSitePatterns EF-hand calcium-binding domain. 285 297 IPR018247 -
Stsc151685g00002 342 SUPERFAMILY Voltage-gated potassium channels 58 158 - -
Stsc151685g00002 342 SUPERFAMILY Voltage-gated potassium channels 167 257 - -
Stsc151685g00002 342 SUPERFAMILY EF-hand 276 338 IPR011992 -
Stsc151685g00002 342 MobiDBLite consensus disorder prediction 27 49 - -
Stsc151685g00002 342 Pfam Ion channel 188 257 IPR013099 -
Stsc151685g00002 342 Pfam Ion channel 67 147 IPR013099 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151685g00002 Stsc-Chr151685 7378 8554 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151685g00002 43 342 Ion Channels AT5G55630 56.811 2.20e-124 360
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151685g00002 K05389 - gmx:100777388 401.749