Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151681g00003 ATGAGAACTCTCTGCGACGTATGCGAAAACGCCGCTGCAATCTTATTCTGCGCCGCCGACGAGGCTGCTCTTTGCCGCGCCTGCGATGACAAGGTGCACATGTGTAACAAACTTGCTAGTAGACATGTTCGAGTTGGACTTGCTGACCCTAGTGATGTTCCTCGTTGTGATATATGTGAAAATGCACCTGGTGACAAAACTGGTAGATTGGATGAACTGGGAATGCAAACCTTAGATCAAAATGGAAAAATGGACAAAAAGCTGTTTGATCTTAATACTAGGCCACAGCGGATAAATGGCTCAACATCAAACAACTTGGATAAAGAGATATTGGGTGGTAACAATCATGATTCTATTGGTGTTGTACCAGTCGAATTGTTCAAACAAGAAGCTGAGAAGTAA 402 0.4353 MRTLCDVCENAAAILFCAADEAALCRACDDKVHMCNKLASRHVRVGLADPSDVPRCDICENAPGDKTGRLDELGMQTLDQNGKMDKKLFDLNTRPQRINGSTSNNLDKEILGGNNHDSIGVVPVELFKQEAEK 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151681g00003 133 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 64 - -
Stsc151681g00003 133 MobiDBLite consensus disorder prediction 94 111 - -
Stsc151681g00003 133 Pfam B-box zinc finger 3 42 IPR000315 GO:0008270
Stsc151681g00003 133 MobiDBLite consensus disorder prediction 93 112 - -
Stsc151681g00003 133 CDD Bbox1_BBX-like 4 47 - -
Stsc151681g00003 133 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Stsc151681g00003 133 SMART bboxneu5 1 47 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151681g00003 Stsc-Chr151681 13227 15154 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151681g00003 1 133 C2C2-CO-like Transcription Factor Family AT4G38960 46.995 1.31e-45 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Stsc151681g00003 zf-B_box 2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151681g00003 - - gmx:100527369 179.489