Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151679g00004 ATGGGCAAAGAGAATGGATCAGCAACGGCCAAGGAAGAACCCAGTGATGACGGTTACTCAAGTCTTGACACTGTTGATTTGGAATCTCAATCACGGCCTAGCCTTGACAAGGACACAGGTTTGCCAAGTTGTCGCGTCTGCCAATGTGCTGAATCTGATAAAAGGGGAGATGCTGCCCTAGAATTTTTGGGAATCACTCCTGTCATCAAAGCTTGTAAACGGAATGGGGAAGATGGTGAGGTGAGGTCAGAAAGCCAGGAAATTCAGAAAAATATGTCTTTTAACAAAAGTGTTGGAGACAAATCTGGGATGGTGGAATTTGTAGGCCCTAATGGGGAGGTTTTTGTGTGTAGAAGTGATGTGGAAATTGGTTTGTCTCATCATGATGCATTGATTGAACTTGGTTGCTGTTGTAAGAATGATCTTGCTTTAGTACACTATGCTTGTGCACTCAAATGGTTTGTTAATCATGGATCAACAATCTGTGAAATATGTGGACACATAGCCAATAATATCAGGATCTCTGACTTCAACAAGGTTGTTGGTTCTCTGAAGGAATATGAAGCCTTGAGGGAGAGAACTGTCAGTGGGGATCCTGCTCCTGCTCAAGTTCATTCTAATAGTAATAATGGTGTTGATCCTGATGCTGTGGCTGCTATCCGGAGGCAACGGTTAAGCGAGATTGCATTATGGTTTTGTCCTCATAATACCAGTAGTATAAACAACAATAGCAATGCGGACACAGTCTCACAGGTTGTTTCTGAGCAGCCATCAAATTTTGTTACTGAAGATGCTGGCCCTGCACAGAGTCCTGCAACCAAGTGGGCCGTCGAAGGCACAGGGATCCTGCTTGCTACTGGCCTGCTTACAATCACCCTTGCATGGTTGATAGCTCCTCGGGTTGGAAAGAAAACAGCAAAAAGTGGACTTCATATCCTACTTGGAGGTGTTTGTGCATTAACAGTGGTTGTTTTCTTCCGCTTTTTTGTTCTTACCAGAATCAAGTATGGGCCTGCACGGTATTGGGCAATCTTGTTCGTTTTCTGGTTTCTTGTGTTTGGAATATGGGCTTCACGGACACATGGTGCCCATACAACGTGA 1101 0.4423 MGKENGSATAKEEPSDDGYSSLDTVDLESQSRPSLDKDTGLPSCRVCQCAESDKRGDAALEFLGITPVIKACKRNGEDGEVRSESQEIQKNMSFNKSVGDKSGMVEFVGPNGEVFVCRSDVEIGLSHHDALIELGCCCKNDLALVHYACALKWFVNHGSTICEICGHIANNIRISDFNKVVGSLKEYEALRERTVSGDPAPAQVHSNSNNGVDPDAVAAIRRQRLSEIALWFCPHNTSSINNNSNADTVSQVVSEQPSNFVTEDAGPAQSPATKWAVEGTGILLATGLLTITLAWLIAPRVGKKTAKSGLHILLGGVCALTVVVFFRFFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHGAHTT 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151679g00004 366 Pfam RING-variant domain 131 165 IPR011016 GO:0008270
Stsc151679g00004 366 SUPERFAMILY RING/U-box 128 168 - -
Stsc151679g00004 366 ProSiteProfiles Zinc finger RING-CH-type profile. 106 172 IPR011016 GO:0008270
Stsc151679g00004 366 PANTHER ZINC FINGER, RING-CH-TYPE 15 333 - -
Stsc151679g00004 366 MobiDBLite consensus disorder prediction 22 37 - -
Stsc151679g00004 366 MobiDBLite consensus disorder prediction 1 39 - -
Stsc151679g00004 366 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 111 175 IPR013083 -
Stsc151679g00004 366 SMART ringv_2 116 166 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151679g00004 Stsc-Chr151679 8490 10550 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151679g00004 1 356 C3H Transcription Factor Family AT5G08750 64.187 1.03e-156 443
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151679g00004 - - gmx:100805323 542.732