Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151676g00003 ATGACTAGTGTTACTCATTCTATTCAAAACCCTAATTCCCAAAATACTATTAACTCGAGAAAACGAAGGAAGATCTCTGAAAACGAGAACGTCGATTCCACCAACGCCAACACCGACACCGATAATGATAAACACTTCCATTGCAAAATCTGCACCGAAACCAAAGCGAAAAAGGAACGTTTCACCATAGCCGGTTGCAACCACTCATTGTGCATAGACTGTACGGTAAATTACATTTCCTCAAAGGTTTATCGAATGATCAAAATCAAAATCCATTGTCCGTTTTGCATGGATAGTTTCTTGAACGTAGATGATTGCCGCAAGATTCTCCCGAAGGAGGTTTTCGATCTGTGGGGAAAGAAGTTGTGTGAGGCTGAGATACCTGAATCTCACAAATTCTATTGTCCGTTCAAGGACTGTTCGGCGCTGATGATCGACGACGGCGAGGGTAGAAAATTGAGGAGGAAATTCAAGTGTCCGCATTGTGATAGAATGTTTTGTTCGCAGTGTAGGGTTGCTTGGCACCATGGAATCAGGTGCAAGGAGTTTCAGGATAGAGTTAGGAAAAATAAGAGGAATAAGGATGATGAGGATGATATGCTGATGAAGATGGCGAAGAAGAAGAAGTGGCAGAGGTGCCCTAATTGCAAGTTCTACGTTGAGAAAACTGTGCTTGTTGGGGACATGGGAAGTGGAAAGACTAGTTTAGCCTTAAGATTTGTAAAAGGCCTATTCTTTGATAACCAGGAACCAACTGTGGGTGCAGCATTTTTCACACAATTGTTATCATTACCTGAAGCTACTGTGAAATTTGACATATGGGATACTGCTGGACAAGAAAGATATCATAGTTTGGCTCCTATATACTACCGTGGTGCAGCAGCAGCAATTGTTGTTTATGACATCTCAAGCACTGATACATTTGTTAAAGCCGAAAAATGGGTTGAAGAATTGCAAATACATGGAAGCCACAAGTTGGTAATGGCATTAGTGGCGAACAAATCGGATTTGGAGCCAAACAGAGAGGTTGAAACCGAGGAAGGGGAACAATTTGCTCATGAGAGTGGAATGTTCTACATCGAAACATCTGCTAAGACCGGAGAGAACATCAATGAGCTTTTCTATGAAATAGCAAAGAGGATAGCAAAAGCTTATGCACCAAAGCTTATAGGGATGAAATTGAACAATGAAATGCAAGATAGAAGGAGAATGTTCTTCTGTTGCTCTGTTTGA 1233 0.4136 MTSVTHSIQNPNSQNTINSRKRRKISENENVDSTNANTDTDNDKHFHCKICTETKAKKERFTIAGCNHSLCIDCTVNYISSKVYRMIKIKIHCPFCMDSFLNVDDCRKILPKEVFDLWGKKLCEAEIPESHKFYCPFKDCSALMIDDGEGRKLRRKFKCPHCDRMFCSQCRVAWHHGIRCKEFQDRVRKNKRNKDDEDDMLMKMAKKKKWQRCPNCKFYVEKTVLVGDMGSGKTSLALRFVKGLFFDNQEPTVGAAFFTQLLSLPEATVKFDIWDTAGQERYHSLAPIYYRGAAAAIVVYDISSTDTFVKAEKWVEELQIHGSHKLVMALVANKSDLEPNREVETEEGEQFAHESGMFYIETSAKTGENINELFYEIAKRIAKAYAPKLIGMKLNNEMQDRRRMFFCCSV 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151676g00003 410 SMART ibrneu5 116 180 IPR002867 GO:0008270
Stsc151676g00003 410 ProSiteProfiles small GTPase Ras family profile. 209 410 IPR001806 GO:0003924|GO:0005525
Stsc151676g00003 410 MobiDBLite consensus disorder prediction 1 19 - -
Stsc151676g00003 410 Gene3D - 217 404 IPR027417 -
Stsc151676g00003 410 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 42 130 IPR013083 -
Stsc151676g00003 410 SMART rho_sub_3 223 384 IPR001806 GO:0003924|GO:0005525
Stsc151676g00003 410 SMART ring_2 48 96 IPR001841 -
Stsc151676g00003 410 MobiDBLite consensus disorder prediction 1 38 - -
Stsc151676g00003 410 ProSiteProfiles small GTPase Rab1 family profile. 206 408 - -
Stsc151676g00003 410 Pfam Zinc finger, C3HC4 type (RING finger) 48 96 IPR018957 GO:0046872
Stsc151676g00003 410 CDD BRcat_RBR_unk 129 183 - -
Stsc151676g00003 410 SMART ras_sub_4 222 384 - -
Stsc151676g00003 410 NCBIfam small GTP-binding protein domain 222 377 IPR005225 GO:0005525
Stsc151676g00003 410 Pfam IBR domain, a half RING-finger domain 131 180 IPR002867 GO:0008270
Stsc151676g00003 410 PANTHER - 219 384 - -
Stsc151676g00003 410 SMART ran_sub_2 226 410 - -
Stsc151676g00003 410 ProSiteProfiles Zinc finger RING-type profile. 48 96 IPR001841 -
Stsc151676g00003 410 SMART rab_sub_5 222 384 - -
Stsc151676g00003 410 Pfam Ras family 222 382 IPR001806 GO:0003924|GO:0005525
Stsc151676g00003 410 ProSiteProfiles small GTPase Rho family profile. 214 382 - -
Stsc151676g00003 410 CDD Rab5_related 221 381 - -
Stsc151676g00003 410 FunFam Small GTPase RAB, putative 215 403 - -
Stsc151676g00003 410 ProSiteProfiles TRIAD supradomain profile. 44 264 IPR044066 -
Stsc151676g00003 410 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 222 391 IPR027417 -
Stsc151676g00003 410 PRINTS Transforming protein P21 ras signature 244 260 - -
Stsc151676g00003 410 PRINTS Transforming protein P21 ras signature 262 284 - -
Stsc151676g00003 410 PRINTS Transforming protein P21 ras signature 324 337 - -
Stsc151676g00003 410 PRINTS Transforming protein P21 ras signature 359 381 - -
Stsc151676g00003 410 PRINTS Transforming protein P21 ras signature 221 242 - -
Stsc151676g00003 410 SUPERFAMILY RING/U-box 42 128 - -
Stsc151676g00003 410 SUPERFAMILY RING/U-box 125 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151676g00003 Stsc-Chr151676 14375 16716 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151676g00003 48 245 C3H Transcription Factor Family AT2G19610 26.087 1.42e-14 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151676g00003 K07889 - gmx:100788883 309.686