Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151668g00004 ATGGAGAACGGAGAGGAAAAGGGCGTTGCGGCGCAGAGAACACTAGTAGGGACCAAGAACGAGGTTGTTCTTCGAATTACCGACAACACCGAAAACGTCGTTTCTTATTCTTCACAAAATGTTGAACTAACAACAGAACTTGAGAATAGTAGCACTGCTCAATCTCCAACTGTTACCACTTCAACCCGCTCCGTTGGTCGTTCTGAATTCTCGAAGCCAAAATCCAGATTGGTGGAACCGCCACATCCAATTATAGCCGCAAGCTTTCACGAAGACAAAACCCAAATTAAGAGCTTCAAATCACCCGCAAGGACTCCCACCACCAAAAAGGGTACTCCTAGTGCCACACCTTCAAGGGATGTTCCTATTACCCCAAGAACCCCTTTGATTGGGACTCCAATGGAAGAAGATGATCATGAAGAGGAGGAGGAGTTTTACAAGACCACTAATGTTGAAGTGAGCAAGAAGAGATCTGGTAAGAGGTGGAAGTTTTTGCGTATGACTGAGTGGCTTGGTTTTGTTTCCATTGGTGGGTTCTTGATTGCGTCCTTGGTAGTCGAAAGGTTGCGAAATTCCGAAATCTGGGGCTTGGACCTGTGGAAATGGTGTGTTCTTGCATTGGTTATCCTCTGTGGGAGACTTGTCACTGGGTGGTTTATAAATGCTATGGTTTTCTTGATTGAACGGAATTTCTTGTTCAAGAAGAAGGTTCTGTATTTTGTTTATGGTGTGCAGAAGAGTGTTCAAGCTTTTTTATGGTTGGGCCTTGTTCTTATGGCATGGGGTTTGCTCTTCAATCACGGGGTTAAGAGATCGAAAAGAGTTAATAGGATTCTTGATTACATTACTAGAGCTCTTGCATCTTGTCTTATTGGGGCAGCTCTATGGTTGGCGAAAACATTGTTGATTAAGCTACTAGCTTCACATTTCCAATCTACTAGGTTTTTCGACCGGATTCAGGAGTCGATTTTTCATCAATACATTCTTCGGACGCTTTCGGGGCCTCCCTTGATGGAAATTGCTGAAAATGTGGGAAAGAGTTCGAGTAGCGGCCGGTTGAGTCTTAAGACTATGGTTAGGGAAAATGGGAATCAAGAGAAGAAAGAAGAGGTCATTGATGTGGACAAGCTCAAGAAAATGAAACAGGAGAAGGTTTCTGCTTTGACTATGAAAGGATTGATCAATGTGATAAAGAGTTCTGGATTGACCACGATTGTGCCGCAGAGTCTTGATGAAGATGAAAATGAGCAGGTGGATAGTGAGATTACTAGTGAGTTGGAAGCAAAGGCGGCGGCGTATCGAATCTTCAGCAATGTAGCCAAGCCAGGAAGCAAGTACATTGAGAAGGAAGACTTATTGCGCTTCATGACGAATGAAGAAGTTGAGAACCTGCTTCCGTTATTTGAAGGAGCAGTTGCAACTGGAAGAATCAAGAGGAAATCTCTCAAGAATTGGCTGGTGAAAGTCTATCAAGAGCGTCAATCCCTTGTGCATTCACTTAATGATACCAAAACAGCTGTTGATGATTTGAACTTGCTTGCTTCCGTGGTCATGGCTATTGTGATCATCATTGTCTGGTTGCTTATAATGGGGTTCCTCACAACCCATGTTCTTCTCTTCATTTCATCTCAGCTTTTGCTTGCAGTGTTTATATTTGGTAACACAGCTAAGACCGTCTTTGAAGCTATTATCTTTGTTTTCGTGAGGCACCCGTTTGATGTTGGCGATCGTTGCGTCATTGATGGTGTTCAGATGACTGTTGAGGAGATGAACATACTAACTACAATCTTCTTGAGATATGACAATGAAAAGATTTCATATCCAAATTCAGTTCTAGCAAATAAACCAATCAGTAACTTCTACCGGAGTCCAGAAATGAGCGAATCAGTCGAATTTGCAGTCGATATGTCGACGCCAATCGAGAGTATCGCAGCTCTAAAGACAAGAATAAAGTCTTACTTGGAGAGCAAGCCACAGCATTGGCGTCCGAACCATAGCATAGCGGTTAAAGATATTGAGAATGTAGAGAAGATGAAAATGGGACTGAGTGTTAATCACACCATAAACTTTCAGAACTATGGGGATAAGAGCAGCAGAAGATCTGAATTACTCTTGGAGTTAAAGAAAATTCTTGAGGATCTTAAGATTAAGTATCATCTTCTGCCTCAAGAAGTTCATCTTCTGAGTTACGTAAATTCCGAAAATTCAACAAAACAATCAGTTTGGAGATGA 2232 0.422 MENGEEKGVAAQRTLVGTKNEVVLRITDNTENVVSYSSQNVELTTELENSSTAQSPTVTTSTRSVGRSEFSKPKSRLVEPPHPIIAASFHEDKTQIKSFKSPARTPTTKKGTPSATPSRDVPITPRTPLIGTPMEEDDHEEEEEFYKTTNVEVSKKRSGKRWKFLRMTEWLGFVSIGGFLIASLVVERLRNSEIWGLDLWKWCVLALVILCGRLVTGWFINAMVFLIERNFLFKKKVLYFVYGVQKSVQAFLWLGLVLMAWGLLFNHGVKRSKRVNRILDYITRALASCLIGAALWLAKTLLIKLLASHFQSTRFFDRIQESIFHQYILRTLSGPPLMEIAENVGKSSSSGRLSLKTMVRENGNQEKKEEVIDVDKLKKMKQEKVSALTMKGLINVIKSSGLTTIVPQSLDEDENEQVDSEITSELEAKAAAYRIFSNVAKPGSKYIEKEDLLRFMTNEEVENLLPLFEGAVATGRIKRKSLKNWLVKVYQERQSLVHSLNDTKTAVDDLNLLASVVMAIVIIIVWLLIMGFLTTHVLLFISSQLLLAVFIFGNTAKTVFEAIIFVFVRHPFDVGDRCVIDGVQMTVEEMNILTTIFLRYDNEKISYPNSVLANKPISNFYRSPEMSESVEFAVDMSTPIESIAALKTRIKSYLESKPQHWRPNHSIAVKDIENVEKMKMGLSVNHTINFQNYGDKSSRRSELLLELKKILEDLKIKYHLLPQEVHLLSYVNSENSTKQSVWR 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151668g00004 743 Gene3D - 571 620 IPR023408 -
Stsc151668g00004 743 MobiDBLite consensus disorder prediction 43 139 - -
Stsc151668g00004 743 Pfam Mechanosensitive ion channel 515 717 IPR006685 GO:0016020|GO:0055085
Stsc151668g00004 743 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 35 736 IPR016688 -
Stsc151668g00004 743 MobiDBLite consensus disorder prediction 43 68 - -
Stsc151668g00004 743 FunFam Predicted mechanosensitive ion channel 571 620 - -
Stsc151668g00004 743 PIRSF Memb_At2g17000 6 741 IPR016688 -
Stsc151668g00004 743 SUPERFAMILY Sm-like ribonucleoproteins 561 620 IPR010920 -
Stsc151668g00004 743 MobiDBLite consensus disorder prediction 99 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151668g00004 Stsc-Chr151668 16399 19535 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151668g00004 60 727 Mechanosensitive Ion Channel Family AT5G12080 52.071 0.0 695
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151668g00004 K22048 - gmx:100777332 934.48