Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Stsc151668g00003 | ATGAGCCGTGTTCTAAGCCCCGTCCCAGTGTCACCTCCTCCTCCATCATCATCATCTTCCTCACCAATCAGCAACAAGAACATCATGCCTATGTTCAACTATGGCCTTGTTGTGGTTGGAACCGCCGTCATAGTGCTTGTCATCTACAACCTCCTCATCATCAAACACTGCCACCGCCGCCGTGACATGTCAGATCAGTTTCCAACAAGGAATAGTAATAATAGGTTTATTGAGGTGGTTGTTACTGCTGCTAATTCCGGTGAAGGAATAAGAAGCTTTGAAAACAATAATTACTATGCAGCAGCAGCATCAAAACAAAGGAATTCTCATTTGCTCTCAAGTTTCAAGTACAAGAAAGAAAAAATGACATCCTCATCAACATCAAAGGAAGGTTCTTTTTCTTTTGTTGATGATGCTAGTGGTGGTGGCGATAGCGATGAGTGCGCTGTTTGTTTATCAGTGTTTGAAGAAGGTGAAGAAGTGAGGAAGCTTCCAAGGTGCAAGCACTCGTTTCATGCTCTTTGTATAGACATGTGGCTTTACTCTCACTTTGATTGCCCAGTTTGTAGAACACCTGTTGGGCCCTTTTGCAACCCTTTTCCCGCCACAGAGAATTCTCGCAGCGGCGGTAGTGGCGGCGGCAGCGGCATCTCTGCTTGA | 660 | 0.4545 | MSRVLSPVPVSPPPPSSSSSSPISNKNIMPMFNYGLVVVGTAVIVLVIYNLLIIKHCHRRRDMSDQFPTRNSNNRFIEVVVTAANSGEGIRSFENNNYYAAAASKQRNSHLLSSFKYKKEKMTSSSTSKEGSFSFVDDASGGGDSDECAVCLSVFEEGEEVRKLPRCKHSFHALCIDMWLYSHFDCPVCRTPVGPFCNPFPATENSRSGGSGGGSGISA | 219 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Stsc151668g00003 | 219 | SMART | ring_2 | 148 | 189 | IPR001841 | - | |
| Stsc151668g00003 | 219 | PANTHER | RING-H2 FINGER PROTEIN ATL51-RELATED | 29 | 193 | IPR044675 | - | |
| Stsc151668g00003 | 219 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
| Stsc151668g00003 | 219 | SUPERFAMILY | RING/U-box | 147 | 200 | - | - | |
| Stsc151668g00003 | 219 | Pfam | Ring finger domain | 146 | 190 | IPR001841 | - | |
| Stsc151668g00003 | 219 | CDD | RING-H2_EL5-like | 147 | 190 | - | - | |
| Stsc151668g00003 | 219 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 101 | 195 | IPR013083 | - | |
| Stsc151668g00003 | 219 | ProSiteProfiles | Zinc finger RING-type profile. | 148 | 190 | IPR001841 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Stsc151668g00003 | Stsc-Chr151668 | 10483 | 11266 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Stsc151668g00003 | 36 | 199 | C3H Transcription Factor Family | AT5G17600 | 35.366 | 1.54e-19 | 84.0 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Stsc151668g00003 | - | - | adu:107479105 | 252.677 |