Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151667g00009 ATGTGTCGGACTGGAACCAAGACAACAAAAGCTATGACCAACTTGGTCGAGTGTCATGCACCTTCATCACTTCATGTCATACCTCTTTTGCTTCTTCTCATTCTCTTTATCACTCCACTCACAATGGCGGAACAGCAGGGGTACCCATTGCCTAAGGTTAAAGGTGACGAGACTATCCCCATTGTTCTCCTAGTTCTCATCTTCCACTTCTTTGCCTTAGGCCTTCTTTCTATATACACTCGCCGATGCTCCCACCGGAGGCACCGTGGCCGCCTGATCAACCCTGCCATGCTCTCCGCCACCTATGGAGGTGGCGATAGCCTTGGCCTCGACATGGCGGCAGTGGAATCATTCCCAACCTTTGTCTACTCCGACGTGAAGAGCCACAAGAATGCGCCGTGTCCGCTAGAATGCGCCGTGTGCCTCAGCGAGTTCCGTGACGAAGAAACCTTGCGTTTGATCCCAAATTGCTGCCACGTTTTCCACCCTAACTGCATTGATGCATGGCTTTGCTCCCACTCAACGTGCCCTGTTTGCCGTGCCAACCTCATGCCAAAACCACGTGTCACGTCATCACCACCACCATCATCATCATCCCTCGTTGTAAACATTTCTAATCAGCCCGACCCGGATCCAGTTATAAGTGATTCAAATCTTATTTCCCTGATCAACGATGATGACCAGAACATAACAACAATAACAGAGCCAAAGTCTCAGCAGAGAAATCCTTTTAATTTTGGTGAAGAGAATGGTTCGATTCGGTCATTTCGTCGTTTTAATTCAACCGGTCATTTCACGGTTCGACCGGCGTAG 813 0.4932 MCRTGTKTTKAMTNLVECHAPSSLHVIPLLLLLILFITPLTMAEQQGYPLPKVKGDETIPIVLLVLIFHFFALGLLSIYTRRCSHRRHRGRLINPAMLSATYGGGDSLGLDMAAVESFPTFVYSDVKSHKNAPCPLECAVCLSEFRDEETLRLIPNCCHVFHPNCIDAWLCSHSTCPVCRANLMPKPRVTSSPPPSSSSLVVNISNQPDPDPVISDSNLISLINDDDQNITTITEPKSQQRNPFNFGEENGSIRSFRRFNSTGHFTVRPA 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151667g00009 270 ProSiteProfiles Zinc finger RING-type profile. 138 180 IPR001841 -
Stsc151667g00009 270 PANTHER RING FINGER DOMAIN-CONTAINING 54 188 - -
Stsc151667g00009 270 CDD RING-H2_EL5-like 137 180 - -
Stsc151667g00009 270 SMART ring_2 138 179 IPR001841 -
Stsc151667g00009 270 FunFam E3 ubiquitin-protein ligase ATL6 100 186 - -
Stsc151667g00009 270 Pfam Ring finger domain 137 180 IPR001841 -
Stsc151667g00009 270 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 105 186 IPR013083 -
Stsc151667g00009 270 SUPERFAMILY RING/U-box 115 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151667g00009 Stsc-Chr151667 24384 25196 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151667g00009 26 270 Rapid Response to Elicitors AT3G05200 35.659 1.58e-41 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151667g00009 K10664 - gmx:100815982 188.348