Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151667g00008 ATGGGAAACGACAGTACTCTCCTCAAACGCTACTATGTGATTAGTTTCCTCTTCCTTCTCCTTCTTCTCATGCAGACCCCGCCACCAGCAACATCTCAGCTAATAGCTACCACAAAAAACCCACCATATCTGTCTCAATCATCGCCAATAGAACCACCCAACAGCAAGTCCGTGATGGCCATCATGTTCATCATCGTCTTTATGTTCCTCCTCTCAGCCTTCATCACGCTGTACTCGCGCCATTGCAACCGTCGTCCATCCCGCTTACAGGCCAGCAGGCTGAACCTCGCCATGGTGACCGGAGAACTTAACGATCACCGGTCCCACGGCGAGTCTGTCGGCATCAGCCAAGAGACAATCGAAACATTCCCCACTTTTCTCTACTCAGCCGTGAAGGGCCACAAGATCGGCACGTGCGCATTGGCGTGCGCGGTGTGCATAAGCGAGTTCGAGGACGAAGAGACTCTTCGCTTTATCCCCAAATGCAGCCACGTGTTTCACCCAACCTGCATCGACGCCTGGCTGCTATCTCATTCCACGTGTCCCCTTTGCCGCGCCGACCTCGTTCCGACACAACACGACGTCGATTCATCTTCCATATTCTCAATTCATATCCCTGATGATGACGTCATCAACGGAATGCCGGAGCAGCAGTGCCAAAACAACGAACAAGAGGACGCTATTGCTGATGCTGGGGCCAGTGATCAAAACGACGACGTAGAATCGTTTTCACCAAAGAGTGGTTTGCTACTTAGAAGCCGTACGGTGAACCATGTTTTGAGCGGCCAAACCCTGCGTTCTTTATTGTTTCCGCGGTCTTACTCGGCCGGAACAGGCTTAGCGACGGTTCAAACCGGAGATAACGATTTTGAAAGGTTTACTCTGAGGTTACCGAGTGAGGTTCGAAGCGAGGTTTTCATGAAGTCGAGATTGAAGCGTGCAAAGACTTGTGTGGGGTTAGTGAGAATGAATAGTGGGACAAAGGGGTATAGGACGACAGGAAGCGTTCGCAGCTGCCGCGAGGACTATGAGCGGTTGCGGTTTGCTTTAACACCGCCGTTTATGACGAAGAATTGGAATAGATTAGGCAGCAGATCTTCATCTTCTGCTCAGTGTTTAGGTGTTGAGGTGGAAAATAATAATGTGGGTGAGCGATCATCTGATCTCTACTTCCCTCGATCAGTAGCTTAA 1191 0.5055 MGNDSTLLKRYYVISFLFLLLLLMQTPPPATSQLIATTKNPPYLSQSSPIEPPNSKSVMAIMFIIVFMFLLSAFITLYSRHCNRRPSRLQASRLNLAMVTGELNDHRSHGESVGISQETIETFPTFLYSAVKGHKIGTCALACAVCISEFEDEETLRFIPKCSHVFHPTCIDAWLLSHSTCPLCRADLVPTQHDVDSSSIFSIHIPDDDVINGMPEQQCQNNEQEDAIADAGASDQNDDVESFSPKSGLLLRSRTVNHVLSGQTLRSLLFPRSYSAGTGLATVQTGDNDFERFTLRLPSEVRSEVFMKSRLKRAKTCVGLVRMNSGTKGYRTTGSVRSCREDYERLRFALTPPFMTKNWNRLGSRSSSSAQCLGVEVENNNVGERSSDLYFPRSVA 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151667g00008 396 Pfam Ring finger domain 142 185 IPR001841 -
Stsc151667g00008 396 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 25 284 - -
Stsc151667g00008 396 ProSiteProfiles Zinc finger RING-type profile. 143 185 IPR001841 -
Stsc151667g00008 396 FunFam E3 ubiquitin-protein ligase ATL6 103 191 - -
Stsc151667g00008 396 CDD RING-H2_EL5-like 143 185 - -
Stsc151667g00008 396 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 101 191 IPR013083 -
Stsc151667g00008 396 SUPERFAMILY RING/U-box 137 193 - -
Stsc151667g00008 396 SMART ring_2 143 184 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151667g00008 Stsc-Chr151667 18133 19547 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151667g00008 18 390 Rapid Response to Elicitors AT3G05200 31.316 4.31e-44 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151667g00008 K10664 - gmx:100814384 275.789