Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151663g00001 ATGCTTATACCCACTTCCATTTTGATATCATTCCTCCTTCTCTTTCCCATCACTGAAGCCAAAGTGTCACAGTTAGATGAAGAAGCTCATGCTTTGCTTTTGACTGCTTGGTGGAGTAACCAACACAATATCTCAAACCGTTGCAACTGGCCTGGTATTCGCTGCAACAATGCTGGAAGCATCACAGAGATTACTTCACCTCCAAGGAACAATTATGACACCAACAATAGCTCGAAAGGCATCGATTTTTCAGCCTTTTCGAATCTTGTCCACCTTGATCTCAGTGGTATGGAGTTGTATGGATTCCCAAAGGGACTAAGTGGTCTCAAGAAACTGGAATTTCTGAACCTATCTCATAACAACCTTAAAGATGAACCAGGTTCTCCTTCTTCATTGGCAAATCTAACTCAACTTCTTGTTCTTGATCTTTCTTACAATAACATTGGTAGTCAAATTCGAAATGAATTCAGCATGCTAGAGAGGCTTGTCAAGTTAGATTTGAGTACAAACTTGTTGAGTGGAAGCATTCCATTAAGCTTGAGTCATATGTCCAATCTCATCTGCATGAACCTTTCTACCAATCAACTAATTGGTGACCTTCCTACTACACTATTTACAAATCTCACCAAGTTAGAAACTCTTGACCTTTCCCTAAATAGATTTAGTGGTCTCATCCCTCAAGAAATAGGGAATTTAACAAACTTGTTAACCTTAGACCTCAGCTTAAACAAAATGGTTGGTCCAATTCCTGACCAAATTGGGTACTTGAACCGTTTGACAAGTCTCAACCTTAATTCAAATTCCATTAATGGTTCTATACCTTCAAGTATAGGACTTTTAAACCATCTGGAAGTGTTGAATATCAAAGACAACCAAGTAGGTGGATTAATCCCTAATGAATTAGAGAACTTGGTTCATCTTAAAGCTTTAGATCTTTCATATAATGAAATTTTGGGTGTTATACCAAAATGGATATCTAACCTGACACAATTAGATGATATAAGACTTTCAAGGAATCAAATTAGTGGCTATATCCCATCTACTATACTTGTTCATATCAGTCATGTCGATCTCAGCACAAACAAGTTAATTGGAAATGTTCCTTTTCAGATTAGCAATGTTTCATATCTAGATGTTAGTTACAACAACCTGGCTGGTCCAATTCCTAAGCAAATAGGGTACTCGAACCGGTTGATGTTTCTCCACCTTGATTCAAATTTCTTCACTGGATCTATACCTTCAAGTATAGGACTTCTAACAGAAATGGAATTTCTCACTATGGGACACAACAAGATAGATGGTTCTATCCCCAAAGAAATAGAGAATATGTTCAATTTAATAGCTTTGGATCTTAGTTGGAATAGACTCTCTGGTGTTATCCCATCTGGTCTCTTTGTTCATGCTCAATTTATGGATCTCAGCTTAAACAATTTAAGTGGAAGCATTCCTTCTGTAATTGGCAAAAATCTCACACATTTAGACCTTGGAAACAACAATCTCAGTGGCAACATACCTGAGGGGCTAGATTCTGTGACATTCTACAATTTAGAGTGCAATTCCTTTCTCAATGGAAATTACAACAACTGTCAAACACAAGAAAATCAATCAGAATACCACAAAAATAATTCTGATAAAGGTTTAAGTACTTTGGCTTTGGTTTTGATAATTGTGGCCAGTGTTCTTGTTTCTTTTGGCTCCATAGGGATTGGAATTTGTGTTCTATGTGCCAGGCATCGCCGTCGAAAACTAAAAGAAAAGGAAGAAAAGCATGGAGACTTGTTCTGCATTTGGAACTATGATGGTAAAATTGCATTTGAGGACATTGTTGAAGCTACAGAGGACTTCCATATCAGATATTGCATTGGAACTGGTGCTTATGGCAGTGTCTACAAAGCAGAACTTCCGAGCGGAAAAACCATTGCATTGAAGAAGCTTCACCAAACAGAATCAGAAAATCCATCTTTTTACAAGAGTTTCTGCAAGGAGGTTGAGGTCTTGACCGAGATTCGCCACCGCAACATCATAAGGCTTTATGGCTATTGTTTGCATAACAGATGCATGTTTTTGGTGTATGAATACTTGGAAAGAGGGAGCTTGTTCTATAACTTGGCGAATGAGATGGAAGCTAAAGAATTGAATTGGAGCAAGAGGGTGAAGATCATTAAAGGGACAGCATTTGCTCTTGCTTACATGCATCATCATTGTACTCCTCCTATTGTTCATAGAGATGTTACCACCAGCAATATACTGCTGAATTCAGAGTTGGAAGCTTTTGTATCAGATTTTGGCACTGCAAGACTTCTTGATACTGATTCATCTAATCATACTCTTCTGGTTGGCACTCATGGATATCTTGCTCCAGAATTGGCTTACACCATGAATGTGACTACAAAATGTGATGTATTTAGTTTTGGAGTGGTGGCATTGGAAACAATGATGGGGCATCATCCAGGAGAATTTTTTTCCTCTTTGTCAGAACCATTTACACAGAACTTATTGGTTAAAGAGGTACTAGATTCGCGAATTCCGCTCCCGAATCTTATGGAAGACATGCAAGATGTTGTGCTTGTTATAACAGTAGCATTGGCATGCCTCTCTTCTGATCCAAAATCAAGACCATCAATGGAAGATGTGGCTAATGAGTTTTTGGCTTCTAAGGCACCAATAAATTTCTGTTTCTCTGATGTTTCTGTCTACCAATTGTTGAATTAA 2712 0.3805 MLIPTSILISFLLLFPITEAKVSQLDEEAHALLLTAWWSNQHNISNRCNWPGIRCNNAGSITEITSPPRNNYDTNNSSKGIDFSAFSNLVHLDLSGMELYGFPKGLSGLKKLEFLNLSHNNLKDEPGSPSSLANLTQLLVLDLSYNNIGSQIRNEFSMLERLVKLDLSTNLLSGSIPLSLSHMSNLICMNLSTNQLIGDLPTTLFTNLTKLETLDLSLNRFSGLIPQEIGNLTNLLTLDLSLNKMVGPIPDQIGYLNRLTSLNLNSNSINGSIPSSIGLLNHLEVLNIKDNQVGGLIPNELENLVHLKALDLSYNEILGVIPKWISNLTQLDDIRLSRNQISGYIPSTILVHISHVDLSTNKLIGNVPFQISNVSYLDVSYNNLAGPIPKQIGYSNRLMFLHLDSNFFTGSIPSSIGLLTEMEFLTMGHNKIDGSIPKEIENMFNLIALDLSWNRLSGVIPSGLFVHAQFMDLSLNNLSGSIPSVIGKNLTHLDLGNNNLSGNIPEGLDSVTFYNLECNSFLNGNYNNCQTQENQSEYHKNNSDKGLSTLALVLIIVASVLVSFGSIGIGICVLCARHRRRKLKEKEEKHGDLFCIWNYDGKIAFEDIVEATEDFHIRYCIGTGAYGSVYKAELPSGKTIALKKLHQTESENPSFYKSFCKEVEVLTEIRHRNIIRLYGYCLHNRCMFLVYEYLERGSLFYNLANEMEAKELNWSKRVKIIKGTAFALAYMHHHCTPPIVHRDVTTSNILLNSELEAFVSDFGTARLLDTDSSNHTLLVGTHGYLAPELAYTMNVTTKCDVFSFGVVALETMMGHHPGEFFSSLSEPFTQNLLVKEVLDSRIPLPNLMEDMQDVVLVITVALACLSSDPKSRPSMEDVANEFLASKAPINFCFSDVSVYQLLN 903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151663g00001 903 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 127 354 - -
Stsc151663g00001 903 Pfam Protein kinase domain 619 880 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151663g00001 903 ProSitePatterns Tyrosine protein kinases specific active-site signature. 739 751 IPR008266 GO:0004672|GO:0006468
Stsc151663g00001 903 Pfam Leucine Rich Repeat 489 509 IPR001611 GO:0005515
Stsc151663g00001 903 Gene3D Ribonuclease Inhibitor 466 525 IPR032675 -
Stsc151663g00001 903 Gene3D Ribonuclease Inhibitor 176 273 IPR032675 -
Stsc151663g00001 903 Gene3D Ribonuclease Inhibitor 274 371 IPR032675 -
Stsc151663g00001 903 Gene3D Ribonuclease Inhibitor 372 465 IPR032675 -
Stsc151663g00001 903 FunFam Leucine-rich repeat receptor protein kinase MSP1 578 693 - -
Stsc151663g00001 903 SMART LRR_sd22_2 419 445 - -
Stsc151663g00001 903 SMART LRR_sd22_2 208 234 - -
Stsc151663g00001 903 SMART LRR_sd22_2 487 510 - -
Stsc151663g00001 903 SMART LRR_sd22_2 109 137 - -
Stsc151663g00001 903 SMART LRR_sd22_2 304 330 - -
Stsc151663g00001 903 SMART LRR_sd22_2 159 188 - -
Stsc151663g00001 903 SUPERFAMILY Protein kinase-like (PK-like) 602 880 IPR011009 -
Stsc151663g00001 903 SUPERFAMILY L domain-like 41 368 - -
Stsc151663g00001 903 Gene3D Ribonuclease Inhibitor 22 175 IPR032675 -
Stsc151663g00001 903 Gene3D Phosphorylase Kinase; domain 1 575 693 - -
Stsc151663g00001 903 ProSiteProfiles Protein kinase domain profile. 615 883 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151663g00001 903 Pfam Leucine Rich repeat 111 125 IPR001611 GO:0005515
Stsc151663g00001 903 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 290 884 - -
Stsc151663g00001 903 FunFam MDIS1-interacting receptor like kinase 2 694 888 - -
Stsc151663g00001 903 FunFam Leucine-rich repeat receptor protein kinase EMS1 369 462 - -
Stsc151663g00001 903 ProSiteProfiles Leucine-rich repeat profile. 111 132 IPR001611 GO:0005515
Stsc151663g00001 903 SMART LRR_typ_2 109 134 IPR003591 -
Stsc151663g00001 903 SMART LRR_typ_2 488 515 IPR003591 -
Stsc151663g00001 903 SMART LRR_typ_2 159 182 IPR003591 -
Stsc151663g00001 903 SMART LRR_typ_2 135 158 IPR003591 -
Stsc151663g00001 903 SMART LRR_typ_2 208 231 IPR003591 -
Stsc151663g00001 903 SMART LRR_typ_2 443 467 IPR003591 -
Stsc151663g00001 903 SMART LRR_typ_2 304 327 IPR003591 -
Stsc151663g00001 903 SMART LRR_typ_2 328 352 IPR003591 -
Stsc151663g00001 903 SMART LRR_typ_2 256 280 IPR003591 -
Stsc151663g00001 903 SMART LRR_typ_2 183 207 IPR003591 -
Stsc151663g00001 903 Gene3D Transferase(Phosphotransferase) domain 1 694 890 - -
Stsc151663g00001 903 SUPERFAMILY RNI-like 321 511 - -
Stsc151663g00001 903 Pfam Leucine rich repeat 258 317 IPR001611 GO:0005515
Stsc151663g00001 903 Pfam Leucine rich repeat 189 244 IPR001611 GO:0005515
Stsc151663g00001 903 ProSitePatterns Protein kinases ATP-binding region signature. 621 643 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151663g00001 Stsc-Chr151663 155 2962 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151663g00001 103 787 Receptor kinase-like Gene Family AT4G08850 37.766 7.86e-137 432
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc151663g00001 Pkinase 5.4e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151663g00001 - - adu:107475518 1419.45