LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc151662g00007	ATGGTTCGAAAATACGTTGAATTATTGGTGATTCTTGTTTGGTTGGTTTCACAAGTTTGCTTTGCAGACCCACCTTATGAGATTTGCTCCAGCCATGAAAACGGGACCGCCTTCCACAACAATCTAAACAACCTTCTCCAGTCCCTACCCTCCAACGCATCATCTTCCAAATTCTACAACACATCATACGGGAACGCCACAGAAAGAGTGTACGGACTCTACATGTGCCTTAACTTCATCTCAAACAAAGCTTGCCAGAACTGCATAGCCACCGCAGCAGAGGACATCCTCAAACTCTGTCCCCAATCACACGAAGCCGTTCTATGGGAAGAGAGCTGTCAGATTCGTTATTCCAATACCATCTTCTTCAGCAAGCTCAATGCCACAGGGAACATAGGCAAAGACAATCTTCAAAATGTATCAGAACCTCACAAATTTCAGTCTTCTGTGAACCAGATACTGAGTAATCTTACCGCCACCGCATCGGCAAACATGTATGCCACCGGAGAAGCCCCCTTTGGAGATGAAACAATATATGCCTTAGTGCAGTGCACAAGAGATTTATCAGCCACTGATTGCAGCAAGTGCCTCAAAAGTGCTATAGAAGAAATACCAGGCTGTTGCTATGGCTCCATCGGTGCCAGAGTTCTGAGTCGTAGCTGTTACCTCAGATATGAATTTTATCCCTTCTATCTTGGTGCCACAGGACCGTTAAGTCCTTCACCCCGCACAAATCAATCTAAAAATGCAGATAGTTCAACGTCGAGCAAAGTATGGATTATTTCGGGCACTGCAGTTGTCCTTGGCTTGGCAATTATCTTGATTTATTGCATGTGCTTTATAAGGAACAAGAAAACATACATGCGGGGTCAAGGAGTTTTCCATCCTCCAGAGGACTCTCCTTATATTGATTTTGGATCACTTTGTGTTGCTACCAATAACTTTTCTGATTCAAATAAGCTTGGACAAGGTGGTTTTGGCCCAGTTTACAAGGGGATTCTAAGCAATGGGCAGGAGGTAGCAATCAAGAGGCTGTCAACCAATTCTGAGCAGGGCTCAGAGGAATTCATAAACGAGATTCTGCTCATAATGAAGCTTCAACACAAAAATCTTGTAAAGCTTCTTGGATTTTGTGTGGATGGAGGAGAGATGCTTCTTGTATATGAATATATGCCCAGTGGTAGCCTTGATGTACTCCTTTTTGATCCTAAGAAACGTGCAAAGCTGGGTTGGAAGAAACGCCTTGATATCATAGATGGATTAGCAAGGGGGATTCTTTATCTTCACGAAGATTCTCGGCTTAAAATCATCCACAGAGACTTAAAAGCAAGCAATGTGTTGTTGGACTCTAACATGAACCCGAAGATCTCGGACTTCGGAATGGCAAAGATATTTGCAGGGAATGAAGGAGAAGCTAACACGGGTACAATAGTTGGCACATATGGGTACATGGCACCGGAGTATGCTATGGAGGGATTATATTCCATAAAATCTGATGTATTTGCATTTGGAGTACTAGTTCTTGAGATCATTACAGGAAAGCGTAACGCTGGCTTCTTTCACTCTAAAAGCAGTCCTAGTCTTTTAGCATATGCATGGCATCTATGGAATGACGGGAAGGGAGTAGAGTTAAAGGATCCCTTGTTAGGTGATTCATGCCAAGAAGATGAGTTCTTGAGATGTATGAATATTGGACTGCTGTGTGTTCAAGAAGATGCATATGTTAGGCCAAGCATGTCTTCTGTTGTGTTAATGTTGAAGAATGAATCAGCAATGGCTGGCCATGGACAACCAGAGCGACCACCTTTCTCAGTAGGGAAATTCAATGACATTGATGGGCCTAACCCTCACTCTAAACAATGCTCTATCAGTTTCTTAACTGTTTCTGAAATATTGCCTCGTGACTGA	1908	0.4303	MVRKYVELLVILVWLVSQVCFADPPYEICSSHENGTAFHNNLNNLLQSLPSNASSSKFYNTSYGNATERVYGLYMCLNFISNKACQNCIATAAEDILKLCPQSHEAVLWEESCQIRYSNTIFFSKLNATGNIGKDNLQNVSEPHKFQSSVNQILSNLTATASANMYATGEAPFGDETIYALVQCTRDLSATDCSKCLKSAIEEIPGCCYGSIGARVLSRSCYLRYEFYPFYLGATGPLSPSPRTNQSKNADSSTSSKVWIISGTAVVLGLAIILIYCMCFIRNKKTYMRGQGVFHPPEDSPYIDFGSLCVATNNFSDSNKLGQGGFGPVYKGILSNGQEVAIKRLSTNSEQGSEEFINEILLIMKLQHKNLVKLLGFCVDGGEMLLVYEYMPSGSLDVLLFDPKKRAKLGWKKRLDIIDGLARGILYLHEDSRLKIIHRDLKASNVLLDSNMNPKISDFGMAKIFAGNEGEANTGTIVGTYGYMAPEYAMEGLYSIKSDVFAFGVLVLEIITGKRNAGFFHSKSSPSLLAYAWHLWNDGKGVELKDPLLGDSCQEDEFLRCMNIGLLCVQEDAYVRPSMSSVVLMLKNESAMAGHGQPERPPFSVGKFNDIDGPNPHSKQCSISFLTVSEILPRD	635

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc151662g00007	635	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	436	448	IPR008271	GO:0004672\|GO:0006468
	Stsc151662g00007	635	FunFam	Cysteine-rich receptor-like protein kinase 28	25	121	-	-
	Stsc151662g00007	635	CDD	STKc_IRAK	321	588	-	-
	Stsc151662g00007	635	Gene3D	-	26	122	IPR038408	-
	Stsc151662g00007	635	Gene3D	-	132	230	IPR038408	-
	Stsc151662g00007	635	FunFam	Cysteine-rich receptor-like protein kinase 10	290	390	-	-
	Stsc151662g00007	635	FunFam	Liguleless narrow1	391	593	-	-
	Stsc151662g00007	635	Pfam	Salt stress response/antifungal	32	119	IPR002902	-
	Stsc151662g00007	635	Pfam	Salt stress response/antifungal	138	227	IPR002902	-
	Stsc151662g00007	635	Gene3D	Phosphorylase Kinase; domain 1	281	390	-	-
	Stsc151662g00007	635	Gene3D	Transferase(Phosphotransferase) domain 1	391	597	-	-
	Stsc151662g00007	635	SMART	serkin_6	315	575	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc151662g00007	635	ProSiteProfiles	Gnk2-homologous domain profile.	20	122	IPR002902	-
	Stsc151662g00007	635	SUPERFAMILY	Protein kinase-like (PK-like)	300	594	IPR011009	-
	Stsc151662g00007	635	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	33	609	-	-
	Stsc151662g00007	635	ProSiteProfiles	Protein kinase domain profile.	315	592	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc151662g00007	635	ProSiteProfiles	Gnk2-homologous domain profile.	128	230	IPR002902	-
	Stsc151662g00007	635	FunFam	Cysteine-rich receptor-like protein kinase 10	131	230	-	-
	Stsc151662g00007	635	Pfam	Protein tyrosine and serine/threonine kinase	318	516	IPR001245	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc151662g00007	Stsc-Chr151662	13336	15928	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc151662g00007	6	614	Receptor kinase-like Gene Family	AT4G05200	41.860	1.68e-172	506

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Stsc151662g00007		PK_Tyr_Ser-Thr	7.1e-48	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc151662g00007	-		-	ahf:112749922	1067.37