LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc151662g00006	ATGGACAAGGACAAAGACACACGTTTAGTTATTATGTATTTGTTGGGCATTATTTGTATGTTATTGTTATGTGTTGCAAGCAGCACAGTCACAGACCCTGTTGACACGTATTGTCCAACTGAATTCCCATTATATAGCAGAAACAGCACCTTTGACAACAACCTGAAGCTTCTTTTGGGGTTGCTTCCCTCCAACACGGCTTCCAAGAATGGCTTCTACAACACATCAGTGGGAGATGGGGAAAACAAGGTGTACGGACAAGCACTGTGCAGAGGAGACATCAGCAACTCCAGAGTGTGCAAGGAATGCATTGAGAAAGCAAGTCAAGATTTAACAAAGAGGTGTAACAGTGAAGATGCAATCATATGGTATGAGCTATGCCAAGTCCGCTACTCCTTTCAGATGTTCTTCTCAACTATGACTTACACTGGAAAGTATCCAAACCATAATCTCAAGGAGAAGAATGTCTCAGACCCTGCTGGATTTGATCATGTCTTGGCATATCTGATGACCAACCTCTCACAAGAAGCTGCTTTTCTTCCTGCCAACAACATGTTTGCAGATGGGGAGATTCAGTATTCTGCTTCTGATGGTATCAAGAACAAGAAGCTTTATGGATTAGTCCAGTGTACCAGGGACATATCTCAACCAGACTGCGCCTCTTGCTTGAGTTCTGCCTTCACAGAACTTACTCAATGCTGCTCCTTCCGAGAAGGCGGCATCATTCTTAGTCGTACTTGTAATGTGAGGTTTGAATCCTATATGTTCTTCAATGATTCATCAGCAAAGATTATGCTCTTTCCGACTTCCAAAGGAGGGGGCAAATGGAAGCCATGGATGTTTGCATTGACAATTGGTGCTTCACTCTTAATATTAGCACTTATTATAGGGTTGTGCACTGCTTCCCTGCGCCATAAAAGGGACACAGACACACAGAGAGATGAAGAAAGGATTGAAAGGACGCTGCTACAACAGTTGGCAAGCTCCAAGAGTGTAGCAGTTACACAGGAAGGTAACCTGATTAGTTCTGATGAACTGTTGTTCATGAGCTTAGCAGCCATTAAGGATGCCACTGATGACTTCTCTGACATAAACAAACTGGGACAAGGAGGATTTGGTGCAGTGTACAAGGGTGTTCTACCAGATGGCAGTGAAGTTGCAGTTAAAAGGTTATCAAGAAAGTCTTGGCAAGGCATAGAGGAATTGAAAAATGAGGTTATACTCATTGCCAAGCTTCAGCACAAGAATCTGGTGAGGCTCTTGGGGTGCGGCTTAGAGGGTGATGAAAAGCTTCTCATATATGAATTCATGTCAAACAAAAGCCTTGATCAATTTATCTTTGATCCAGAGAAACGTTCCGAGTTCGATTGGCAGACTTGGTATGGCATCATCATTGGCATTGCAAGAGGACTGCTTTATCTTCATGAAGAGTCTCGGCTGAAAATCATTCACAGGGATTTAAAGCCAAACAATGTGTTGTTGGACCATGACATGGTTGCCAAAATATCAGATTTCGGTATGGCTAGAATATTTTTCGAGAATCAGAATACAGCAAATACAAAGAGAGTTGTAGGAACATAG	1581	0.4257	MDKDKDTRLVIMYLLGIICMLLLCVASSTVTDPVDTYCPTEFPLYSRNSTFDNNLKLLLGLLPSNTASKNGFYNTSVGDGENKVYGQALCRGDISNSRVCKECIEKASQDLTKRCNSEDAIIWYELCQVRYSFQMFFSTMTYTGKYPNHNLKEKNVSDPAGFDHVLAYLMTNLSQEAAFLPANNMFADGEIQYSASDGIKNKKLYGLVQCTRDISQPDCASCLSSAFTELTQCCSFREGGIILSRTCNVRFESYMFFNDSSAKIMLFPTSKGGGKWKPWMFALTIGASLLILALIIGLCTASLRHKRDTDTQRDEERIERTLLQQLASSKSVAVTQEGNLISSDELLFMSLAAIKDATDDFSDINKLGQGGFGAVYKGVLPDGSEVAVKRLSRKSWQGIEELKNEVILIAKLQHKNLVRLLGCGLEGDEKLLIYEFMSNKSLDQFIFDPEKRSEFDWQTWYGIIIGIARGLLYLHEESRLKIIHRDLKPNNVLLDHDMVAKISDFGMARIFFENQNTANTKRVVGT	526

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc151662g00006	526	FunFam	Cysteine-rich receptor-like protein kinase 10	148	256	-	-
	Stsc151662g00006	526	Gene3D	Transferase(Phosphotransferase) domain 1	437	526	-	-
	Stsc151662g00006	526	Gene3D	-	144	256	IPR038408	-
	Stsc151662g00006	526	Gene3D	-	34	136	IPR038408	-
	Stsc151662g00006	526	ProSiteProfiles	Protein kinase domain profile.	361	526	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc151662g00006	526	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase B120	437	526	-	-
	Stsc151662g00006	526	FunFam	Cysteine-rich RLK (RECEPTOR-like protein kinase) 10	32	136	-	-
	Stsc151662g00006	526	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	40	526	-	-
	Stsc151662g00006	526	ProSitePatterns	Protein kinases ATP-binding region signature.	367	389	IPR017441	GO:0005524
	Stsc151662g00006	526	FunFam	Cysteine-rich receptor-like protein kinase 10	324	436	-	-
	Stsc151662g00006	526	Pfam	Protein kinase domain	362	526	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc151662g00006	526	Pfam	Salt stress response/antifungal	44	133	IPR002902	-
	Stsc151662g00006	526	Pfam	Salt stress response/antifungal	155	254	IPR002902	-
	Stsc151662g00006	526	Gene3D	Phosphorylase Kinase; domain 1	321	436	-	-
	Stsc151662g00006	526	ProSiteProfiles	Gnk2-homologous domain profile.	32	136	IPR002902	-
	Stsc151662g00006	526	SMART	serkin_6	361	524	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc151662g00006	526	SUPERFAMILY	Protein kinase-like (PK-like)	343	526	IPR011009	-
	Stsc151662g00006	526	ProSiteProfiles	Gnk2-homologous domain profile.	144	256	IPR002902	-
	Stsc151662g00006	526	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	482	494	IPR008271	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc151662g00006	Stsc-Chr151662	10224	12088	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc151662g00006	15	526	Receptor kinase-like Gene Family	AT4G05200	40.374	9.14e-117	358

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Stsc151662g00006		Pkinase	3.5e-33	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc151662g00006	-		-	adu:107488598	923.309