LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc151662g00003	ATGTATCTCTCCCCCAACAACACAACTTTTTTGTTGATTCTAATCTCAATTTCTATGCTAATGAATCACAGTAATTGCATACCAACATACAACTACCATGTCTGTAGAGATCCAATATTGGAGAATGCAAGCAACAGTGATATTTTCCAATCTGAGCTAACTTCCCTTTTGGAAATTTTATCTTTAGCAGCTTCCTCTAAGAGCTTCTACAATGCTAGTATTTCCAAGAGGCTTTATGGGCTCTTCCTCTGCAGGGGTGACGTTTCCGCTAAAACCTGCAAAAAATGTACTGGAATTGCCAGCCAAGAAATCAAAAGCAAGTGCGTATGGAATTCTAGCGGAGTAATCTGGTATGACGAATGCATGGTTAGGTACTCCAAGGAAAACTTCTTTGGGGTGGCAAAAACTAGTCCATTAGCATTCGTTTGGAACACCAATGACAAAAATAGAACTTCACCTAGTGAAACTCATCTGAATGCACAAGCACTGATGTACCCGTTGATACAAGATGCCTCAAGTAGGAAGAGGCGGTTCAAATTAGGGAAATCTACTGTGTGTGATGGGTCGGAGAGATATGGGTTAGCGCAGTGTACAAGGGATATAAATAAATCTTCATGCATCTCTTGTTTGACTCATTTGATGAATAAATCTGGGCAGTGTTGCCAACACAAAGTTGGGTGGCGCTTACTGGCTCCTTCTTGCTATATCAGGTACGAAAAGGATATCTTCTATGGGGATACTACAGGGCCACTAATATCACCTAATACTCAAAAACCAGTACTACCAACCAAAGATAACGGAAAACGCGTTCAAAAACTCCTTATATTCCACATGATCATTCCAATTACAAGTTGTTTGCTCTTCTATCTCATCTGGTCTTCAACTCAACTCAGGAAAGGACCACAACAAGGGGAAGGGCTTACCGATGTAATTCAAGGAATGAATGTTACACATGAAGACAATAAGGGAGAAGTACAATACTTTAGTTTGAGCACGATTAAGGTTGCTACCAACAGTTTTTCTGATGACAACAAGCTAGGTGAAGGGGGCTTTGGGCCTGTTTTCAAGGGGAAGTTAAGTAACGGCAAGGAAATAGCAGTTAAAAGGCTTTCATTCAAATCAAGGCAAGGCATTGAAGAATTCAAGAATGAAATGACGTTGATTGCAAAACTTCAACACAAAAATCTTGTTAGGATCTTGGGATGCTGCATTGATAGAAACGAAAAGCTTCTTGTCTATGAGTACATGGCCAACACTGGTCTTGATGCTTTTCTATTCGATCAAAACAAATGTGTAAATCTGGACTGGCCTAAGCGGGAAAAAATTATAAATGGAATTGCAAGAGGTCTTTCATATCTACATGAGGATTCCCGCTTGAAAATCATTCATAGAGATTTGAAAGCTAGCAATGTATTATTAGATGAAGATATGAATCCAAAGATATCAGATTTTGGAACAGCGAGAATTTTTTATAGTGATCAAATTGAAGGAACCACGGAAAAGGTTGTTGGTACATATGGTTATATGGCACCGGAGTATGCTTTGGAAGGATCGTTTTCCGTCAAATCTGACGTATACAGCTTTGGAGTACTAATGTTAGAAATTTTAAGCGGAAGAAAGAACATTAATTTCTATCAGCCAGAGAGTCGTGATCAAACCTTGACCCTTATAGCCTACGCATGGCGACTCTGGAATGATGGCAAGGAGCAGGAATTTTTGGATCGTCTCCTCGTCAAGGCTTGCCCCATAGATGTGGCATTAAGATGGATTCATATTGGACTTTTGTGTGTTCAAGAAAGACCTAAAGATAGGCCAACCATGTCCTCAGTTATTTTGATGCTTGCAAGTTCTACAAGCCTGCCTCAGCCACTTGCACCTCCATTCTCTTTAAGCAACTATTATGATAATACAAGTGATCAATCTTCAACAACCGAAGAAGAAGAAGATGATGATATAGAATTTCAACCCTCTTCTGCTAAGACTAAGAGTAATGATACGTGA	2001	0.3958	MYLSPNNTTFLLILISISMLMNHSNCIPTYNYHVCRDPILENASNSDIFQSELTSLLEILSLAASSKSFYNASISKRLYGLFLCRGDVSAKTCKKCTGIASQEIKSKCVWNSSGVIWYDECMVRYSKENFFGVAKTSPLAFVWNTNDKNRTSPSETHLNAQALMYPLIQDASSRKRRFKLGKSTVCDGSERYGLAQCTRDINKSSCISCLTHLMNKSGQCCQHKVGWRLLAPSCYIRYEKDIFYGDTTGPLISPNTQKPVLPTKDNGKRVQKLLIFHMIIPITSCLLFYLIWSSTQLRKGPQQGEGLTDVIQGMNVTHEDNKGEVQYFSLSTIKVATNSFSDDNKLGEGGFGPVFKGKLSNGKEIAVKRLSFKSRQGIEEFKNEMTLIAKLQHKNLVRILGCCIDRNEKLLVYEYMANTGLDAFLFDQNKCVNLDWPKREKIINGIARGLSYLHEDSRLKIIHRDLKASNVLLDEDMNPKISDFGTARIFYSDQIEGTTEKVVGTYGYMAPEYALEGSFSVKSDVYSFGVLMLEILSGRKNINFYQPESRDQTLTLIAYAWRLWNDGKEQEFLDRLLVKACPIDVALRWIHIGLLCVQERPKDRPTMSSVILMLASSTSLPQPLAPPFSLSNYYDNTSDQSSTTEEEEDDDIEFQPSSAKTKSNDT	666

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc151662g00003	666	ProSiteProfiles	Gnk2-homologous domain profile.	29	130	IPR002902	-
	Stsc151662g00003	666	ProSiteProfiles	Gnk2-homologous domain profile.	136	243	IPR002902	-
	Stsc151662g00003	666	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase	307	415	-	-
	Stsc151662g00003	666	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	461	473	IPR008271	GO:0004672\|GO:0006468
	Stsc151662g00003	666	Pfam	Protein tyrosine and serine/threonine kinase	343	611	IPR001245	GO:0004672\|GO:0006468
	Stsc151662g00003	666	Gene3D	Transferase(Phosphotransferase) domain 1	416	622	-	-
	Stsc151662g00003	666	MobiDBLite	consensus disorder prediction	625	640	-	-
	Stsc151662g00003	666	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	65	651	-	-
	Stsc151662g00003	666	Gene3D	Phosphorylase Kinase; domain 1	314	415	-	-
	Stsc151662g00003	666	FunFam	Uncharacterized protein	416	619	-	-
	Stsc151662g00003	666	ProSiteProfiles	Protein kinase domain profile.	340	625	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc151662g00003	666	SUPERFAMILY	Protein kinase-like (PK-like)	323	640	IPR011009	-
	Stsc151662g00003	666	Gene3D	-	139	243	IPR038408	-
	Stsc151662g00003	666	Gene3D	-	28	130	IPR038408	-
	Stsc151662g00003	666	SMART	serkin_6	340	590	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc151662g00003	666	Pfam	Salt stress response/antifungal	42	127	IPR002902	-
	Stsc151662g00003	666	Pfam	Salt stress response/antifungal	148	240	IPR002902	-
	Stsc151662g00003	666	CDD	STKc_IRAK	346	614	-	-
	Stsc151662g00003	666	MobiDBLite	consensus disorder prediction	625	666	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc151662g00003	Stsc-Chr151662	5504	9200	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc151662g00003	12	645	Receptor kinase-like Gene Family	AT4G05200	41.275	1.51e-166	491

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Stsc151662g00003		PK_Tyr_Ser-Thr	9.5e-49	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc151662g00003	-		-	aip:107640338	786.563