Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151658g00007 ATGACGGAGGCGGTGGAAACTGGAGCATGCCTTTGGATGGTAACTAAAAACCATATCTTCGGCATCCGCCTTGAAAATTTGGAGAGTTTGGGGAACAAAGATGTTAGGGATCGCAAATCCATTCGTGTGCCACCTCCCGTTGATTTCCATCTGAAATTTCCAGACCCTGACTTGCGTCCCTTCGTCTTCCACTCAAACCTTTTCTTCGCCGGTGGTTCACCCCATTCTTCCACCAAAATCCACCAACTCTCCTATGCCGGCGGCACCACGTTGGACATAGCTGAGACCGCAGCGGCGGGCCCCATCCCTCCGCCACCGACCCTTCTGTACGACTGTTACGTTGAAAGCATTCAAGGTGACGTTTACTTGATGGTGCACGATTGGAAGATGGATACCAGAGATATGGGGTTTTGGGTTCTTCGTTCCGGTTCCGGTTCCAAGCAGTGGCATCCCTTGCCCCTTCCCCCAAGCTTACTCAACTCTGATTATGATTCTGAATCTGATTCTGATTTGAATTTTGTCCGTTTCCGTTGGTGGAGATGTTTCGTGTGGAAAGACAAGCTCGTATTAGAAGTGGAAGCTGATCACACTGAAGAATCATACTCAAGAAACAACATGTTCATTTTTTACGTGTACGATCCCAGAATTGGATGTTGGGAGCAACTAAAGTCCCCTTTTTATACCTCTTTTCCTAAATATGATCCGGCCTGTGTGGCTGTGAAATCCATTGGGGAGGTAGGCAATTGCAGTGTGGCGATTACATGGTCGAGGGAGAGGCTTCCCTCAGAGTATTTTCTGGAAGTGAAAGTGAAGATACATGCTTTGTTGGTGGATGATGAGCATAGTATCCATGGCCAACAATGCCTTGATGAGGTTTGTGAGGCTATACCTTCCCCCTTTGATGCTACCGAACTAGATGCAAAATTTGTTGACCTTGGCAACAGCAAAGTATGCGCTGTCATTGGTAGTGTCACAAACGGCAATCCAGTTCTTTGCGTGAGAGGAACATCCCTGAACTGCCCTGTACCTCCTTTCTTTTCTCACTCTCCAAAGGAAGTTCCTGACAACGAGTTTGAAAAGCGGATTAGGCCAGAAGTTATCCCTGCAAATGAGATAGGAGTTACATTTTCAGATATTGGTTCATTGGATGAGATCAAAGAATCACTTCAAGAACTGGTGATGCTTCCCCTTAGAAGACCAGACCTCTTCAAAGGTGGACTTCTGAAGCCATGTAGAGGCATATTGCTTTTTGGACCTCCTGGAACTGGAAAGACAATGCTGGCAAAGGCAATTGCGAATGAGGCCGGAGCGAGTTTCATCAATGTCTCAATGTCCACCATCACTTCAAAGTGGTTTGGAGAAGATGAAAAGAATGTTAGAGCTTTGTTCACACTTGCAGCAAAGGTTGCTCCTACTATAATCTTTGTAGACGAGGTTGACAGCATGCTTGGACAGCGAACTCGAGTTGGAGAGCATGAGGCCATGAGGAAGATCAAGAATGATTTCATGACACATTGGGATGGACTATTAACTAGACCTGATGAGCAAATTCTGGTTCTTGCTGCAACTAACAGGCCATTTGATCTTGATGAAGCAATTATAAGACGATTCGAGCGCAGATTATGGTTGGTCTTCCATCTGTTGAGAACAGGGAAAAGATTCTGA 1665 0.4601 MTEAVETGACLWMVTKNHIFGIRLENLESLGNKDVRDRKSIRVPPPVDFHLKFPDPDLRPFVFHSNLFFAGGSPHSSTKIHQLSYAGGTTLDIAETAAAGPIPPPPTLLYDCYVESIQGDVYLMVHDWKMDTRDMGFWVLRSGSGSKQWHPLPLPPSLLNSDYDSESDSDLNFVRFRWWRCFVWKDKLVLEVEADHTEESYSRNNMFIFYVYDPRIGCWEQLKSPFYTSFPKYDPACVAVKSIGEVGNCSVAITWSRERLPSEYFLEVKVKIHALLVDDEHSIHGQQCLDEVCEAIPSPFDATELDAKFVDLGNSKVCAVIGSVTNGNPVLCVRGTSLNCPVPPFFSHSPKEVPDNEFEKRIRPEVIPANEIGVTFSDIGSLDEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVAPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNDFMTHWDGLLTRPDEQILVLAATNRPFDLDEAIIRRFERRLWLVFHLLRTGKRF 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151658g00007 554 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 373 547 - -
Stsc151658g00007 554 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 338 541 - -
Stsc151658g00007 554 SMART AAA_5 410 547 IPR003593 GO:0016887
Stsc151658g00007 554 Gene3D - 373 542 IPR027417 -
Stsc151658g00007 554 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 373 540 IPR027417 -
Stsc151658g00007 554 ProSitePatterns AAA-protein family signature. 517 536 IPR003960 GO:0005524|GO:0016887
Stsc151658g00007 554 Pfam ATPase family associated with various cellular activities (AAA) 414 541 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151658g00007 Stsc-Chr151658 30232 32196 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151658g00007 372 553 Calmodulin-binding Proteins AT3G56690 30.412 1.00e-20 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151658g00007 - - gmx:100804099 368.622